CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_LACDB (50S ribosomal protein L2 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 75/221 (33.94%), Postives = 110/221 (49.77%), Query Frame = 3
Query:    9 SKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            SK    ++ ++ K AG     H    HR G    Q+R +DF      +K  +  I +DP R A +A + +         K   +A +G+  G +V  G  A + VGN LP+++IP G  V N+E   G  G +AR++G  A ++    D   T+V+L SG  + I S CRA IG V   G  +  L+  G A   ++  KR   P+ RG  MNP +HPHGG
Sbjct:   27 SKPEKTLLASKSKTAGRNSYGHITVRHRGGGHKQQYRIIDFKRTKDNVKAKIVAIEYDPNRSANIALLHYTDG-----TKAYILAPKGLTVGSWVESGVDADIKVGNALPLKNIPTGTEVHNIELKPGKGGQIARSAGTSAQVL--GVDGKYTQVRLQSGEVREILSECRATIGAV---GNEQHSLINIGKAGRSRWMGKR---PQSRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_LACDA (50S ribosomal protein L2 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 75/221 (33.94%), Postives = 110/221 (49.77%), Query Frame = 3
Query:    9 SKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            SK    ++ ++ K AG     H    HR G    Q+R +DF      +K  +  I +DP R A +A + +         K   +A +G+  G +V  G  A + VGN LP+++IP G  V N+E   G  G +AR++G  A ++    D   T+V+L SG  + I S CRA IG V   G  +  L+  G A   ++  KR   P+ RG  MNP +HPHGG
Sbjct:   27 SKPEKTLLASKSKTAGRNSYGHITVRHRGGGHKQQYRIIDFKRTKDNVKAKIVAIEYDPNRSANIALLHYTDG-----TKAYILAPKGLTVGSWVESGVDADIKVGNALPLKNIPTGTEVHNIELKPGKGGQIARSAGTSAQVL--GVDGKYTQVRLQSGEVREILSECRATIGAV---GNEQHSLINIGKAGRSRWMGKR---PQSRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BURPP (50S ribosomal protein L2 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 68/210 (32.38%), Postives = 106/210 (50.48%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            I  + KG G     H HH      +R +DF      +   V  + +DP R A +A V +        +++  IA +G+  GQ +  G +A +  GN LP+R+IP G  +  +E   G    +AR++G  A++++   +    +V+L SG  + +   CRA IG+V     + + + KAG N +   R      P VRGVAMNPV+HPHGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFRRNKDGIAAKVERLEYDPNRSANIALVLYADG-----ERKYIIAPKGLTVGQQLMSGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLAR--EGIYAQVRLRSGEIRRVHVECRATIGEVGNEEHSLRQIGKAGANRWRGIR------PTVRGVAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BURP8 (50S ribosomal protein L2 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 68/210 (32.38%), Postives = 105/210 (50.00%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            I  + KG G     H HH      +R +DF      +   V  + +DP R A +A V +        ++   IA +G+  GQ +  G +A +  GN LP+R+IP G  +  +E   G    +AR++G  A++++   +    +V+L SG  + +   CRA IG+V     + + + KAG N +   R      P VRGVAMNPV+HPHGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRIVDFRRTKDGIPAKVERLEYDPNRSANIALVVYADG-----ERRYIIAPKGVTVGQQLMSGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLAR--EGTYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIR------PTVRGVAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BUCAT (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 61/185 (32.97%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +   V    +DP R + +A + ++       +++  +A +G+  G  +  G +A +  GN LP+++IP G  V NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDG-----ERKYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAF--DEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BUCAI (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 61/185 (32.97%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +   V    +DP R + +A + ++       +++  +A +G+  G  +  G +A +  GN LP+++IP G  V NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDG-----ERKYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAF--DEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BUCA5 (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 61/185 (32.97%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +   V    +DP R + +A + ++       +++  +A +G+  G  +  G +A +  GN LP+++IP G  V NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDG-----ERKYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAF--DEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BLOFL (50S ribosomal protein L2 OS=Blochmannia floridanus GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 61/186 (32.80%), Postives = 95/186 (51.08%), Query Frame = 3
Query:   99 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            ++R +DF      +  VV  + +DP R A +A + ++       ++   +A   +  G  +  G    +  GN LP+ +IP G+++ NVE  VG  G LAR++G Y  I+S   D +   ++L SG  + +   CRA IG+V       + L KAG +       R   P VRG AMNP++HPHGG
Sbjct:   63 RYRIIDFKRNKDDVFAVVERMEYDPNRSANIALIVYKDG-----ERRYILAPRNLNVGNKIISGLNVPISPGNSLPLSNIPVGSIIHNVEMKVGKGGQLARSAGTYVQIVSR--DGEYIILRLRSGEIRKVRCECRATIGEVGNNEHMLRALGKAGASRW-----RGIRPTVRGTAMNPIDHPHGG 236          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ACIAD (50S ribosomal protein L2 OS=Acinetobacter sp. (strain ADP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 71/219 (32.42%), Postives = 107/219 (48.86%), Query Frame = 3
Query:   12 KEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            K    ++ A+++  G     H  T H  G     +R +DF      +  VV  I +DP R A +A + +        ++   IA +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     V+L SG  + I   CRA+IG+V+      + L KAG +       R   P VRG+AMNPV+HPHGG
Sbjct:   28 KPFAALVEAKKRTGGRNNNGHITTRHVGGGHKQHYRLVDFKRNKDGIPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGTSVQLLGR--DGSYAIVRLRSGEMRKIHVECRAVIGEVSNQENNLRSLGKAGASRW-----RGVRPTVRGMAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 64/200 (32.00%), Postives = 97/200 (48.50%), Query Frame = 3
Query:   75 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            T HR G  +  +R ++F      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +  G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  +++   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGG
Sbjct:   51 TGHRGGGHKRLYRKINFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGARIGDTIVSGTEVPISMGNALPLTDMSLGTAIHNIEITLGKGGQLARAAGTVAKLIAKEGKSATLR--LPSGEVRLVSKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LACDB6.115e-2133.9450S ribosomal protein L2 OS=Lactobacillus delbruec... [more]
RL2_LACDA6.115e-2133.9450S ribosomal protein L2 OS=Lactobacillus delbruec... [more]
RL2_BURPP6.115e-2132.3850S ribosomal protein L2 OS=Burkholderia phytofirm... [more]
RL2_BURP86.115e-2132.3850S ribosomal protein L2 OS=Burkholderia phymatum ... [more]
RL2_BUCAT6.115e-2132.9750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BUCAI6.115e-2132.9750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BUCA56.115e-2132.9750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BLOFL6.115e-2132.8050S ribosomal protein L2 OS=Blochmannia floridanus... [more]
RL2_ACIAD6.115e-2132.4250S ribosomal protein L2 OS=Acinetobacter sp. (str... [more]
RK2_ILLOL6.115e-2132.0050S ribosomal protein L2, chloroplastic OS=Illiciu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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