CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_MESFL (50S ribosomal protein L2 OS=Mesoplasma florum GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 66/200 (33.00%), Postives = 99/200 (49.50%), Query Frame = 3
Query:   75 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            T H+ G    ++R +DF      + G +A I +DP R A +  V +        +K   + A+GM  G  +   + A + VGN  P+++IPEG ++ NVE   G  G +AR++G    I+  + D     ++L SG  + + + C A IG+V   G  E  L+  G A       RN W    P VRG  MNP +HPHGG
Sbjct:   52 TRHKGGGHKQKYRIIDFKRNKRDVVGTIATIEYDPNRNAFICLVNYLDG-----EKRYILFAKGMTVGMKIVASEHADIKVGNAAPLKNIPEGTLIHNVELKPGKGGQMARSAGTSVQILGKDDDGKYVTLRLTSGEVRKVLADCYATIGEV---GNEEYNLVNWGKA------GRNRWRGIRPTVRGSVMNPNDHPHGG 237          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_EHRCR (50S ribosomal protein L2 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 73/215 (33.95%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   24 RVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            ++ R  R   G +   H   R     +R +DF      +   V  + +DP R A +A +++        +K   IA  G+  G  V  G  A ++ GN L ++SIP G  V NVE   G+ GV+AR++G YA ++S   D     ++L SG  + + S CRA IG V+        L KAG         R+ W    P VRGVAMNP++HPHGG
Sbjct:   37 KISRGGRNSRGVITVRH-RGRGHKRLYRVVDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGDGADILPGNCLLLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGMYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RSRWLGIRPTVRGVAMNPIDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CLOTE (50S ribosomal protein L2 OS=Clostridium tetani GN=rplB PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 69/205 (33.66%), Postives = 99/205 (48.29%), Query Frame = 3
Query:   48 GAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            G  S  K    HR G A+  +R +DF      +   VA I +DP R A +A V +        +K   IA +G+  G  +  G  A +  GN LP+++IP G  V N+E   G    L R++G  A +++   + +   +KLPSG  + +   CRA IG V+        + KAG      + K    P VRG AMNP +HPHGG
Sbjct:   42 GRNSQGKITVRHRGGGAKRKYRIIDFKRDKDGIPAKVATIEYDPNRTAFIALVVYTDG-----EKRYIIAPQGLKVGDVIVSGPDADIKAGNCLPIKNIPVGTFVHNIELASGKGAQLVRSAGGSAQLMA--KEGNYATIKLPSGETRYVRIECRATIGTVSNVKHEIMSIGKAGR-----KRKMGFRPTVRGSAMNPCDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ACIBL (50S ribosomal protein L2 OS=Acidobacteria bacterium (strain Ellin345) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 72/212 (33.96%), Postives = 102/212 (48.11%), Query Frame = 3
Query:   42 RKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            R+ AG +   H    H RK     R +DF      +   VA + +DP R A +A + +        +K   +   G+  GQ V  G  A ++VGN LP+R+IP G VV N+E   G    +AR++G  A +++   ++D   +KLPSG  + +   C A IGQV         + KAG         R  W    P  RGV MNPV+HPHGG
Sbjct:   43 RRNAGDITIWHRGGGHKRK----LRLIDFKRDKSGVPATVATVEYDPNRSANIALLHYADG-----EKRYILHPVGLKVGQKVVSGPDADILVGNALPLRNIPAGTVVHNIELKPGKGAQMARSAGAQAQLVA--KESDYALLKLPSGETRRVLVDCMATIGQVGNLDYENVAIGKAG---------RTRWMGVRPTNRGVVMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ACIAC (50S ribosomal protein L2 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 70/211 (33.18%), Postives = 104/211 (49.29%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGG 656
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A V +        ++   IA   +  G  +  G +A + VGN LP+R+IP G+ +  +E   G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGVAMNP++HPHGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDAIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKPGAGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRRIHIECRATIGEVANEEHSLRQLGKAG-------VKRWMGIRPTVRGVAMNPIDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 65/194 (33.51%), Postives = 99/194 (51.03%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      + G +  I +DP R A +  +       Y   ++ +I       G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L + G    ++R KR   P VRGV MNPV+HPHGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIITIEYDPNRNAHICLI------HYGDGEKRYILHPKAIIGDTIVYGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRVG--AKRWRGKR---PVVRGVVMNPVDHPHGG 231          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 66/194 (34.02%), Postives = 102/194 (52.58%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HPHGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSK--RWLGKR---PVVRGVVMNPVDHPHGG 231          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 66/194 (34.02%), Postives = 102/194 (52.58%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HPHGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSK--RWLGKR---PVVRGVVMNPVDHPHGG 231          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 66/194 (34.02%), Postives = 102/194 (52.58%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HPHGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSK--RWLGKR---PVVRGVVMNPVDHPHGG 231          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 66/194 (34.02%), Postives = 102/194 (52.58%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HPHGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSK--RWLGKR---PVVRGVVMNPVDHPHGG 231          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_MESFL7.986e-2133.0050S ribosomal protein L2 OS=Mesoplasma florum GN=r... [more]
RL2_EHRCR7.986e-2133.9550S ribosomal protein L2 OS=Ehrlichia chaffeensis ... [more]
RL2_CLOTE7.986e-2133.6650S ribosomal protein L2 OS=Clostridium tetani GN=... [more]
RL2_ACIBL7.986e-2133.9650S ribosomal protein L2 OS=Acidobacteria bacteriu... [more]
RL2_ACIAC7.986e-2133.1850S ribosomal protein L2 OS=Acidovorax avenae subs... [more]
RK2_PEA7.986e-2133.5150S ribosomal protein L2, chloroplastic OS=Pisum s... [more]
RK2_OENPA7.986e-2134.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENGL7.986e-2134.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH7.986e-2134.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENBI7.986e-2134.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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