CF834726

Overview
NameCF834726
Unique NameCF834726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_BURS3 (Chaperone protein htpG OS=Burkholderia sp. (strain 383) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P + I I  DK   +++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:   21 HSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYEDDPNVRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLS 109          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_BUCAP (Chaperone protein htpG OS=Buchnera aphidicola subsp. Schizaphis graminum GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YSNKEIFLRELISN+SDA+DK+RF+S+++    +   +  I I  +K+  +L I D+GIGMT+ D+V NLGTIA+SGTK F+++L
Sbjct:   24 HSLYSNKEIFLRELISNASDAIDKLRFQSISNPELYENDSDFKIQISINKSQGTLIISDNGIGMTRQDVVENLGTIAKSGTKSFIKSL 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RALSO (Chaperone protein htpG OS=Ralstonia solanacearum GN=htpG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLREL+SN+SDA+DK+RFE + D S L+   EL I I  D    +++I D+GIGM++ + + NLGTIARSGT+EF   L+
Sbjct:   23 HSLYSNKEIFLRELVSNASDAVDKLRFEGIADPSLLEGGGELGIRIGFDAQARTVTIADNGIGMSRDEAIRNLGTIARSGTREFFSQLS 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_CLOBL (Chaperone protein htpG OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=htpG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 670
            N+ Y++KEIFLRELISNSSDA+DKI +++LTD S    + + +I ++ DK N  L I D+GIGMTK +L NNLG IA+SG+ +F
Sbjct:   19 NSIYTHKEIFLRELISNSSDAIDKIYYKTLTDDSLKFERDDYYIKVVSDKENRVLKIADTGIGMTKEELENNLGVIAKSGSLQF 102          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_CLOBK (Chaperone protein htpG OS=Clostridium botulinum (strain Okra / Type B1) GN=htpG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 670
            N+ Y++KEIFLRELISNSSDA+DKI +++LTD S    + + +I ++ DK N  L I D+GIGMTK +L NNLG IA+SG+ +F
Sbjct:   19 NSIYTHKEIFLRELISNSSDAIDKIYYKTLTDDSLKFERDDYYIKVVSDKENRVLKIADTGIGMTKEELENNLGVIAKSGSLQF 102          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_SACD2 (Chaperone protein htpG OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=htpG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLREL+SN+SDA DK+RFE+L     L+   EL I I  DK   +LSI D+GIGM + +++ NLGTIARSGT +FM  L+
Sbjct:   25 HSLYSNKEIFLRELVSNASDAADKLRFEALKQPELLEQDSELKITIDFDKEAKTLSITDNGIGMNRDEVIANLGTIARSGTAQFMANLS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_PSEAE (Chaperone protein htpG OS=Pseudomonas aeruginosa GN=htpG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 47/89 (52.81%), Postives = 69/89 (77.53%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLRELISN+SDA DK+RFE+L +   L+   EL I +  DK  N++++ D+GIGM++ D+V +LGTIA+SGT +F++ L+
Sbjct:   25 HSLYSNKEIFLRELISNASDAADKLRFEALANPELLEGGAELKIRVSFDKEANTVTLEDNGIGMSREDVVTHLGTIAKSGTADFLKNLS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_PSEA7 (Chaperone protein htpG OS=Pseudomonas aeruginosa (strain PA7) GN=htpG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 47/89 (52.81%), Postives = 69/89 (77.53%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLRELISN+SDA DK+RFE+L +   L+   EL I +  DK  N++++ D+GIGM++ D+V +LGTIA+SGT +F++ L+
Sbjct:   25 HSLYSNKEIFLRELISNASDAADKLRFEALANPELLEGGAELKIRVSFDKEANTVTLEDNGIGMSREDVVTHLGTIAKSGTADFLKNLS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_DESHY (Chaperone protein htpG OS=Desulfitobacterium hafniense (strain Y51) GN=htpG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 46/93 (49.46%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 697
            N+ Y+++EIFLRELISN++DA +K+R+  L+ ++  D +  L I I PD+   +L+I D+GIGMTK DL+ N+GTIA SG+K F++ LA   D
Sbjct:   22 NSLYTDREIFLRELISNAADASEKVRYMQLSGQNVKDQELPLEIRITPDENAKTLTIADAGIGMTKEDLIENIGTIAHSGSKAFVQRLAEAGD 114          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_CLOBH (Chaperone protein htpG OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=htpG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 670
            N+ Y++KEIFLRELISNSSDA+DKI +++LTD S    +   +I ++ DK N  L I D+GIGMTK +L NNLG IA+SG+ +F
Sbjct:   19 NSIYTHKEIFLRELISNSSDAIDKIYYKTLTDDSLKFERDNYYIRVVSDKENRILKIADTGIGMTKEELENNLGVIAKSGSLQF 102          
The following BLAST results are available for this feature:
BLAST of CF834726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_BURS31.004e-1953.93Chaperone protein htpG OS=Burkholderia sp. (strain... [more]
HTPG_BUCAP1.004e-1953.41Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_RALSO1.311e-1953.93Chaperone protein htpG OS=Ralstonia solanacearum G... [more]
HTPG_CLOBL1.311e-1955.95Chaperone protein htpG OS=Clostridium botulinum (s... [more]
HTPG_CLOBK1.311e-1955.95Chaperone protein htpG OS=Clostridium botulinum (s... [more]
HTPG_SACD21.712e-1956.18Chaperone protein htpG OS=Saccharophagus degradans... [more]
HTPG_PSEAE1.712e-1952.81Chaperone protein htpG OS=Pseudomonas aeruginosa G... [more]
HTPG_PSEA71.712e-1952.81Chaperone protein htpG OS=Pseudomonas aeruginosa (... [more]
HTPG_DESHY1.712e-1949.46Chaperone protein htpG OS=Desulfitobacterium hafni... [more]
HTPG_CLOBH1.712e-1955.95Chaperone protein htpG OS=Clostridium botulinum (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834726 ID=CF834726; Name=CF834726; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTATACATTGCACTCGAAGCTAGCAAATATCTTTTCTGACTTGAAG
AATATGAAAACTCTTCCTGGCGCAGGTATGAGCGATCCGTCAGAAGGTTA
CTTACTCCCCCCTTCCAGTATTGCTGATGATGATGTTGGGAATGACAATC
TTGATCTTATTGTTATTCCTCAATATGGGAGAAATCCTGATTATTATGGG
TAAGTGTCTGCAATCTGGATGATGATATATATAATTAAATAAAAAGATGG
GTACAGTTATTATCTATCAATTATAAGAGTGTCAATTTAGTTCAGTTCAC
TTACAAAAATCTCTTATACAAGAGATTATCTTTGTTTGCGTTCATGTACT
TTGTCTTCTTTAATTAATAAATAAAACTATTGTGTAAAAAAAAAAAAAAG
TTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCT
TCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTG
AAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATT
CACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGG
TATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTA
GGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTG
AGC
back to top