CF834729

Overview
NameCF834729
Unique NameCF834729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: MALF3_MALFU (Putative peroxiredoxin (Fragment) OS=Malassezia furfur PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.347e-24
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 3
Query:   39 VGH*LPDATLSYFDSAVELQTITVSDLTSN---------KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG 470
            +G  +P+AT +Y   + EL+   V  + ++         KK ++ AVPGAFTPTC+  H+P +VEK  ELKSKGVD V  IS ND FV+ AW       D +    D N  F+K     LDLS K  G+G+R+ RYAL+A +  V+   ++EG
Sbjct:    2 IGSTIPNATFAYVPYSPELEDHKVCGMPTSFQSHERWKGKKVVIVAVPGAFTPTCTANHVPPYVEKIQELKSKGVDEVVVISANDPFVLSAWGITEHAKDNLTFAQDVNCEFSKHFNATLDLSSK--GMGLRTARYALIANDLKVEYFGIDEG 152          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRDX5_RAT (Peroxiredoxin-5, mitochondrial OS=Rattus norvegicus GN=Prdx5 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 67/169 (39.64%), Postives = 95/169 (56.21%), Query Frame = 3
Query:   12 ATPVSAAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 515
            A    A I VG  +P   +   +     + + +++L  +KK +LF VPGAFTP CS+ HLPGFVE++  LK+KG   VAC+SVNDAFV   W        +V LL+D  G F K     LD S   +    R +R++++ + GVVK LN+E +G   T S A ++L  L
Sbjct:   48 AAVTMAPIKVGDTIPSVEVFEGEPG---KKVNLAELFKDKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDAFVTAEWGRAHQAEGKVQLLADPTGAFGKETDLLLDDSLVSLFGNRRLKRFSMVIDKGVVKALNVEPDGTGLTCSLAPNILSQL 213          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRX2F_ARATH (Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 56/140 (40.00%), Postives = 85/140 (60.71%), Query Frame = 3
Query:   90 ELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGA-FTFSGAEDML 506
            +  T  +SD+   KK ++F +PGA+T  CSQ+H+P +     + K+KG+D+V C+SVND F +  W E LG  D +    D +G F K++G + DLS     LG RS R++   E+G VK +N+EE  + F  +GAE +L
Sbjct:   61 KFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLS--AALLGPRSERWSAYVEDGKVKAVNVEEAPSDFKVTGAEVIL 198          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRDX5_PAPHA (Peroxiredoxin-5, mitochondrial OS=Papio hamadryas GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.828e-24
Identity = 65/170 (38.24%), Postives = 96/170 (56.47%), Query Frame = 3
Query:    9 QATPVSAAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 515
            +A    A I VG  +P   +   +       + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KGV  +AC+SVNDAFV   W     +  +V LL+D  G F K     LD S   +    R +R++++ ++G+VK LN+E +G   T S A  ++  L
Sbjct:   49 RAAAAMAPIKVGDAIPAVEVFEGEPG---NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFVTGEWGRAHKVEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPSIISQL 215          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRDX5_HUMAN (Peroxiredoxin-5, mitochondrial OS=Homo sapiens GN=PRDX5 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.828e-24
Identity = 66/170 (38.82%), Postives = 96/170 (56.47%), Query Frame = 3
Query:    9 QATPVSAAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 515
            +A    A I VG  +P   +   +       + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KGV  VAC+SVNDAFV   W        +V LL+D  G F K     LD S   +    R +R++++ ++G+VK LN+E +G   T S A +++  L
Sbjct:   48 RAAAAMAPIKVGDAIPAVEVFEGEPG---NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRDX5_CERAE (Peroxiredoxin-5, mitochondrial OS=Cercopithecus aethiops GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 65/170 (38.24%), Postives = 95/170 (55.88%), Query Frame = 3
Query:    9 QATPVSAAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 515
            +A    A I VG  +P   +   +       + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KGV  +AC+SVNDAFV   W        +V LL+D  G F K     LD S   +    R +R++++ ++G+VK LN+E +G   T S A  ++  L
Sbjct:   49 RAAAAMAPIKVGDAIPAVEVFEGEPG---NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPSIISQL 215          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRDX5_BOVIN (Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PRDX5 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 64/169 (37.87%), Postives = 96/169 (56.80%), Query Frame = 3
Query:   12 ATPVSAAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 515
            A    A I VG  +P   +   +       + +++L   KK +LF +PGAFTP CS+ HLPGFVE++  LK+KG+  VAC++VND FV + W        +V LL+D +G F K     LD S   +    R +R++++ E+G+VK LN+E +G   T S A ++L  L
Sbjct:   54 AAVAMAPIKVGDAIPSVEVFEKEPG---NKVNLAELFKGKKGVLFGLPGAFTPGCSKTHLPGFVEQADALKAKGIQVVACLTVNDVFVTEEWARAHKAEGKVRLLADPSGTFGKETDLLLDDSLLFLFGNHRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNILSQL 219          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: Y1621_SYNY3 (Putative peroxiredoxin sll1621 OS=Synechocystis sp. (strain PCC 6803) GN=sll1621 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  105 TVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 464
            T   +   KK +LF++PGAFTPTCS  HLP + +   E ++ GVD + C+SVNDAFVM  W + +G  D+V LL DGNG FT+ +G  ++ S+  +G G+RS RY++   +G ++ + +E
Sbjct:   32 TTEQIFGGKKVVLFSLPGAFTPTCSSNHLPRYEQLFEEFQALGVDDIICLSVNDAFVMFQWGKQIGA-DKVKLLPDGNGEFTRKMGMLVEKSN--LGFGMRSWRYSMFVNDGKIEKMFIE 148          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PMPA_CANBO (Putative peroxiredoxin-A OS=Candida boidinii GN=PMPA PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 58/141 (41.13%), Postives = 87/141 (61.70%), Query Frame = 3
Query:  102 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLA-ENGVVKVLNLEEGGAFTFSGAEDMLKAL 515
            + +S     KK ++ +VPGAFTP C+++HLPG+++    + SKGVD V  IS ND FV+K WK+ LG  D  +++ +SD N   TK +G  +DLS   +GLG RS R AL+   +G+V+   +E GG    S A+ ++  L
Sbjct:   29 LELSKFVKTKKFVVVSVPGAFTPPCTEQHLPGYIKNLPRILSKGVDFVLVISQNDPFVLKGWKKELGAADAKKLVFVSDPNLKLTKKLGSTIDLS--AIGLGTRSGRLALIVNRSGIVEYAAIENGGEVDVSTAQKIIAKL 167          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PMP20_LIPKO (Putative peroxisomal peroxiredoxin OS=Lipomyces kononenkoae PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = 3
Query:  126 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLL-SDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 515
            +K  ++ A+PGAFTPTC+  H+P FVEK   LKS GVD V  +S ND FV  A+ + LG+ DE  +  SD    F+K+ G  LDL   P   G R+ RYA++  NGVVK +  +  G    SG + +L AL
Sbjct:   40 DKTVVIVAIPGAFTPTCTANHIPPFVEKFTALKSAGVDAVIVLSANDPFVQSAFGKALGVTDEAFIFASDPGAEFSKSAGLSLDL---PPAFGTRTARYAIIVSNGVVKYVEKDSEGV-AGSGVDAVLAAL 166          
The following BLAST results are available for this feature:
BLAST of CF834729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
MALF3_MALFU2.347e-2441.18Putative peroxiredoxin (Fragment) OS=Malassezia fu... [more]
PRDX5_RAT4.003e-2439.64Peroxiredoxin-5, mitochondrial OS=Rattus norvegicu... [more]
PRX2F_ARATH5.228e-2440.00Peroxiredoxin-2F, mitochondrial OS=Arabidopsis tha... [more]
PRDX5_PAPHA6.828e-2438.24Peroxiredoxin-5, mitochondrial OS=Papio hamadryas ... [more]
PRDX5_HUMAN6.828e-2438.82Peroxiredoxin-5, mitochondrial OS=Homo sapiens GN=... [more]
PRDX5_CERAE1.987e-2338.24Peroxiredoxin-5, mitochondrial OS=Cercopithecus ae... [more]
PRDX5_BOVIN4.426e-2337.87Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PR... [more]
Y1621_SYNY39.860e-2343.33Putative peroxiredoxin sll1621 OS=Synechocystis sp... [more]
PMPA_CANBO9.860e-2341.13Putative peroxiredoxin-A OS=Candida boidinii GN=PM... [more]
PMP20_LIPKO1.288e-2244.27Putative peroxisomal peroxiredoxin OS=Lipomyces ko... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834729 ID=CF834729; Name=CF834729; organism=Citrus sinensis; type=EST; length=710bp
CTCTCCACCAAGCCACGCCAGTCTCCGCCGCCATTTCCGTGGGCCATTAA
CTCCCCGACGCCACCCTCTCCTACTTCGACTCCGCCGTCGAGCTCCAGAC
CATCACCGTCTCCGACCTCACCTCCAATAAAAAAGCAATCCTATTCGCCG
TCCCCGGCGCCTTCACCCCCACCTGCTCCCAAAAACACCTCCCGGGCTTC
GTCGAGAAATCCGCCGAGTTGAAATCCAAAGGCGTCGACACTGTCGCCTG
CATTTCCGTGAACGACGCCTTCGTTATGAAGGCCTGGAAGGAGAATCTTG
GAATCAACGATGAAGTGCTTTTGTTGTCTGATGGGAACGGGGTGTTCACT
AAGGCTATTGGCTGTGAGCTCGACTTGAGTGACAAGCCCATGGGATTGGG
AGTTAGGTCCAGGAGGTACGCCCTTTTGGCAGAAAACGGCGTCGTTAAGG
TGCTCAATTTGGAGGAGGGCGGCGCCTTTACTTTCAGCGGAGCTGAGGAC
ATGCTCAAAGCTCTGTGATTTCGGTGAGATAGTTTTTTTTTTTTTAATAA
TTTAACTTTCATTAGAGTGTTGAATAATGTGTCTTTGTTACTAAAAACTC
GTGTTTCGGGTTTTGAAATTTCTACTTCTCCTTGTGCATTTGAATTTTCA
GAGCTGTTTGGATTTTTATCCTGCTCAATTTAATTTTTTATCCCAAAAAA
AAAAAAAAAA
back to top