CF834747

Overview
NameCF834747
Unique NameCF834747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.685e-15
Identity = 52/190 (27.37%), Postives = 97/190 (51.05%), Query Frame = -2
Query:  191 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYK--DDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVK-YQVCSPEALSKLL--VKHGVTQPAAE 745
            K++++ DH   A+AG+ +D  +L    R +   + + Y  P+PV +L   L D  Q  TQ    RP+GV  L AG D++ G  LY + PSGNY  ++           ++ L++ ++  +D + E+ ++ AL  + +T+    LTS    +A V     G V+ +++   + + +++  ++     PAAE
Sbjct:   62 KVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSMEAAEEAPAAE 250          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.829e-14
Identity = 49/151 (32.45%), Postives = 76/151 (50.33%), Query Frame = -2
Query:  299 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAG-WDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDY-KDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 745
            K+Y++ D + C + G+  DA  L   AR++AQ     +    P+  L + +   KQ +TQ+ G RPFGVSFL+AG  D  Y   L  +DPSG    WK              LK D+ +D++  + A    L++L K  +     +D+LE+
Sbjct:   58 KIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTTLCKFVGQRKQAFTQYAGTRPFGVSFLYAGVIDGKYA--LMSTDPSGTSNRWKGMCYGENEEAINRGLKNDFPEDEMDMKTATVEILRLLGKARELGPKEADRLEI 206          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 48/159 (30.19%), Postives = 84/159 (52.83%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+ K+D H+    AG+++D+  L+  A+++AQ + + Y   + VE + QS+ +      QFG         RPFGV+ LFAG D+  G +L+  DPSG +   K           +  LK+ Y D ++ +E +++AL +L + M+   L S  +E+  +
Sbjct:   66 KISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLA---LQFGDDDVKASMSRPFGVAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMALAILKQVMEE-KLNSANVEVVVI 219          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14
Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = -2
Query:  335 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTM 742
            ++ I  ++     G+ +DA  L+  AR +A  + + Y   MPV+ L + + D  Q YTQ   +RP GV  +  G D  YG QLY  DP+G+Y G K            + L++  K+D   + EE VQ A+  L   +
Sbjct:   69 LFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVL 206          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14
Identity = 48/160 (30.00%), Postives = 79/160 (49.38%), Query Frame = -2
Query:  269 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 745
            +++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V  +  G+
Sbjct:   66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWVGELTKGR 224          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.074e-14
Identity = 48/160 (30.00%), Postives = 79/160 (49.38%), Query Frame = -2
Query:  269 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 745
            +++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V  +  G+
Sbjct:   66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWVGELTKGR 224          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.074e-14
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = -2
Query:  269 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 745
            +++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V  + +G+
Sbjct:   66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVA-KIIYIVHDEVKDKAFELELSWVGELTNGR 224          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.074e-14
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = -2
Query:  269 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 745
            +++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V  + +G+
Sbjct:   66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWVGEITNGR 224          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14
Identity = 50/155 (32.26%), Postives = 83/155 (53.55%), Query Frame = -2
Query:  269 DHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYK-DDISREE-AVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 727
            DHV  A AG+ +DA ILIN A+V+ Q +    ++P+ +E + + +   KQ YTQ  G RPFG+S L  G+D +    L+ ++PSG +  +K           +   ++ Y+ +++S E  AV+LA++ L +   S           EV +M +GK
Sbjct:   68 DHVVMAFAGL-TDARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQSGQ------HNLEVAIMENGK 215          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14
Identity = 44/149 (29.53%), Postives = 79/149 (53.02%), Query Frame = -2
Query:  299 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 745
            +++ ID HV  A+AG ++DA  LI  AR +A+ Y   Y +P+P++ L Q +      +T +G +RPFG S    G D+ YG QL++ +PSG+  G+            ++ L++    +++  EA++   +++    D       +LEL
Sbjct:   66 RVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQ-YGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCREAIKEVSRIIYSVHDEVKDKDFELEL 213          
The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PSA1_ORYSJ3.685e-1527.37Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA4_ENCCU1.829e-1432.45Probable proteasome subunit alpha type-4 OS=Enceph... [more]
PSA5_CAEEL2.388e-1430.19Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA6_SOYBN3.119e-1431.88Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA3_MOUSE3.119e-1430.00Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_RAT4.074e-1430.00Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_HUMAN4.074e-1430.00Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN4.074e-1430.00Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA71_DROVI5.321e-1432.26Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSA3_DICDI5.321e-1429.53Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTAGGTAAACTGCATCCAACATCATAACATCTGCCAT
TACCAAGCTTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTG
GGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATT
AAGTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCA
GGTTGCGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGA
GCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTA
ATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGC
ACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTA
ATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAG
CAGCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGG
AAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAACGG
GCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATT
GAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGT
TGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTCGCATCAGACATTAT
TCCAGCTACGGCACAAGCAACGTGATCATCAATCTTGTACATCTTC
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