CF834747

Overview
NameCF834747
Unique NameCF834747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = -2
Query:  290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742
            ++KI +++ C + G+ +D+   +  AR +A  + Y Y   +PV+ L + + D  Q YTQ   +RP G   +  G D+  G Q+Y  DP+G Y G+K            S L++  K   D + E+ V+ A+  LS T+ S      ++E+  V
Sbjct:   69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = -2
Query:  290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742
            ++KI +++ C + G+ +D+   +  AR +A  + Y Y   +PV+ L + + D  Q YTQ   +RP G   +  G D+  G Q+Y  DP+G Y G+K            S L++  K   D + E+ V+ A+  LS T+ S      ++E+  V
Sbjct:   69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = -2
Query:  290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742
            ++KI +++ C + G+ +D+   +  AR +A  + Y Y   +PV+ L + + D  Q YTQ   +RP G   +  G D+  G Q+Y  DP+G Y G+K            S L++  K   D + E+ V+ A+  LS T+ S      ++E+  V
Sbjct:   69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = -2
Query:  290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742
            ++KI + + C + G+ +D+   +  AR +A  + Y Y   +PV+ L + + D  Q YTQ   +RP G   +  G D+  G Q+Y  DP+G Y G+K            S L++  K   D + E+ V+ A+  LS T+ S      ++E+  V
Sbjct:   69 LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.548e-13
Identity = 50/177 (28.25%), Postives = 85/177 (48.02%), Query Frame = -2
Query:  224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK-VKYQVCSPEALSKLL 745
            K++K+DDHV  A+AG+++D  +L    R +   Y Y +    P+  + + + +  Q + QF G RPFGV  L AG+D   G  LY + PSG+   +K           ++ L++ ++   D   +E +  ALK L+      +    +L +    +   GK   + V + EA  K L
Sbjct:   63 KVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDST-GPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGA----ELNIKNTTIAIVGKGTPFMVLTEEAARKYL 234          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13
Identity = 47/156 (30.13%), Postives = 78/156 (50.00%), Query Frame = -2
Query:  299 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 745
            K+ ++D H+ CA +G+M+DA  LI  ARV+ Q + + Y E M +E   Q++      +   G         RPFGV+ LFAG +     QL+  DPSG +               Q  L+  ++ D++ +EA+ ++L  L + M+   L S  +E+
Sbjct:   66 KIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQP-QLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQVMEE-KLNSTNVEV 219          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13
Identity = 45/178 (25.28%), Postives = 90/178 (50.56%), Query Frame = -2
Query:  212 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHG 745
            +++ I+ ++  AVAG+++D N + + AR +A  Y   +++ +P++ L   +      YT +  +RPFG+S + A WD+  G QLY  +PSG+  G+            ++ +++  K D+  +E V+ A +++ K  D       + E+  V  +  G     + +P  L++   K G
Sbjct:   66 RIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEK-LKMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGRVTGG---LHLINPSELTEKARKAG 239          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.504e-13
Identity = 41/138 (29.71%), Postives = 69/138 (50.00%), Query Frame = -2
Query:  335 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTM 742
            ++ I  ++     G+ +DA  L+  AR +A  + + +   MPV+ L + + D  Q YTQ   +RP GV  +  G+D+    QL+  DP+G++ G K            + L++  KDD   S EE VQ+A+  L   +
Sbjct:   69 LFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVL 206          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 43/146 (29.45%), Postives = 70/146 (47.95%), Query Frame = -2
Query:  311 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDSTSLTSD 742
            ++ I  ++     G+ +DA  L+  AR +A  + + Y   MPV+ L + + D  Q YTQ   +RP GV  +  G D+  G QL+  DP+G++ G K            + L++  K+D   S EE VQ A+  L   +      S+
Sbjct:   69 LFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASE 214          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12
Identity = 45/153 (29.41%), Postives = 73/153 (47.71%), Query Frame = -2
Query:  290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDY--KDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742
            +Y+I   V C   G++ DA   I  A+ +A  + Y     MP E L + + D  Q YTQ   +R  G + LF  +D   G ++Y  DP+G Y G K            S L++    K +++  EA++LA++ L  ++    + S  LE+  V
Sbjct:   69 VYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSL-GIDVRSKDLEVVVV 220          
The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PSA6_RAT6.949e-1429.41Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_HUMAN6.949e-1429.41Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN6.949e-1429.41Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_MOUSE1.185e-1329.41Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA1_TRYCR1.548e-1328.25Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA5_DROME3.449e-1330.13Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA3_DROME3.449e-1325.28Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA6_ORYSJ4.504e-1329.71Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6_TOBAC1.003e-1229.45Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6_CAEEL1.311e-1229.41Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTAGGTAAACTGCATCCAACATCATAACATCTGCCAT
TACCAAGCTTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTG
GGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATT
AAGTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCA
GGTTGCGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGA
GCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTA
ATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGC
ACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTA
ATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAG
CAGCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGG
AAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAACGG
GCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATT
GAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGT
TGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTCGCATCAGACATTAT
TCCAGCTACGGCACAAGCAACGTGATCATCAATCTTGTACATCTTC
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