CF834747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14 Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = -2 Query: 290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742 ++KI +++ C + G+ +D+ + AR +A + Y Y +PV+ L + + D Q YTQ +RP G + G D+ G Q+Y DP+G Y G+K S L++ K D + E+ V+ A+ LS T+ S ++E+ V Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14 Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = -2 Query: 290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742 ++KI +++ C + G+ +D+ + AR +A + Y Y +PV+ L + + D Q YTQ +RP G + G D+ G Q+Y DP+G Y G+K S L++ K D + E+ V+ A+ LS T+ S ++E+ V Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14 Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = -2 Query: 290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742 ++KI +++ C + G+ +D+ + AR +A + Y Y +PV+ L + + D Q YTQ +RP G + G D+ G Q+Y DP+G Y G+K S L++ K D + E+ V+ A+ LS T+ S ++E+ V Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13 Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = -2 Query: 290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742 ++KI + + C + G+ +D+ + AR +A + Y Y +PV+ L + + D Q YTQ +RP G + G D+ G Q+Y DP+G Y G+K S L++ K D + E+ V+ A+ LS T+ S ++E+ V Sbjct: 69 LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.548e-13 Identity = 50/177 (28.25%), Postives = 85/177 (48.02%), Query Frame = -2 Query: 224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK-VKYQVCSPEALSKLL 745 K++K+DDHV A+AG+++D +L R + Y Y + P+ + + + + Q + QF G RPFGV L AG+D G LY + PSG+ +K ++ L++ ++ D +E + ALK L+ + +L + + GK + V + EA K L Sbjct: 63 KVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDST-GPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGA----ELNIKNTTIAIVGKGTPFMVLTEEAARKYL 234
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13 Identity = 47/156 (30.13%), Postives = 78/156 (50.00%), Query Frame = -2 Query: 299 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 745 K+ ++D H+ CA +G+M+DA LI ARV+ Q + + Y E M +E Q++ + G RPFGV+ LFAG + QL+ DPSG + Q L+ ++ D++ +EA+ ++L L + M+ L S +E+ Sbjct: 66 KIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQP-QLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQVMEE-KLNSTNVEV 219
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13 Identity = 45/178 (25.28%), Postives = 90/178 (50.56%), Query Frame = -2 Query: 212 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHG 745 +++ I+ ++ AVAG+++D N + + AR +A Y +++ +P++ L + YT + +RPFG+S + A WD+ G QLY +PSG+ G+ ++ +++ K D+ +E V+ A +++ K D + E+ V + G + +P L++ K G Sbjct: 66 RIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEK-LKMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGRVTGG---LHLINPSELTEKARKAG 239
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.504e-13 Identity = 41/138 (29.71%), Postives = 69/138 (50.00%), Query Frame = -2 Query: 335 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTM 742 ++ I ++ G+ +DA L+ AR +A + + + MPV+ L + + D Q YTQ +RP GV + G+D+ QL+ DP+G++ G K + L++ KDD S EE VQ+A+ L + Sbjct: 69 LFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVL 206
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12 Identity = 43/146 (29.45%), Postives = 70/146 (47.95%), Query Frame = -2 Query: 311 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDSTSLTSD 742 ++ I ++ G+ +DA L+ AR +A + + Y MPV+ L + + D Q YTQ +RP GV + G D+ G QL+ DP+G++ G K + L++ K+D S EE VQ A+ L + S+ Sbjct: 69 LFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASE 214
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12 Identity = 45/153 (29.41%), Postives = 73/153 (47.71%), Query Frame = -2 Query: 290 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDY--KDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 742 +Y+I V C G++ DA I A+ +A + Y MP E L + + D Q YTQ +R G + LF +D G ++Y DP+G Y G K S L++ K +++ EA++LA++ L ++ + S LE+ V Sbjct: 69 VYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSL-GIDVRSKDLEVVVV 220 The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 156
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bpback to top |