CF834747

Overview
NameCF834747
Unique NameCF834747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGN----YGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+ K D+H+  ++AG+  DA +L N  R Q    +  +   + VE+    LCD  Q  TQ  G RP+GV  L  G+DK+ G  L    PSGN    YG              +  L    K D + +E ++  ++ +S+++   SLT D L +A V
Sbjct:   62 KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIV 216          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12
Identity = 41/138 (29.71%), Postives = 67/138 (48.55%), Query Frame = -2
Query:  335 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTM 742
            ++ I  ++     GI +DA  L+  AR QA  + + Y   MPV+ L + + D  Q YTQ   +RP GV  +  G D+  G  LY  DP+G++ G K            + L++  K++   + +E VQ A+  L   +
Sbjct:   69 LFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVL 206          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.504e-12
Identity = 33/90 (36.67%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  476 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPS 745
            K+Y+ID H   ++AG++SD  IL    + +   + + Y++ +P+++L +S+    Q  TQ+ G RPFGV  L AG+DK+ G  +  +DPS
Sbjct:   62 KVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKD-GAHIIQTDPS 150          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 56/188 (29.79%), Postives = 90/188 (47.87%), Query Frame = -2
Query:  194 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQ--DYKDDISREEAVQLALKVLSKTMD-STSLTSDKLELAEVFLMPSGK-VKYQVCSPEALSKLLVKHGVTQPAA 745
            K+ +IDDH+  A+AG+  DA +L N  + +A      +  P+PV +L+  + +  Q  TQ  G RP+GV FL  G+D++ G  L    PSG    +            ++ +++  D   D SREE +  AL+ L  T+     LT + + ++ +     GK  KY +       + L K G   PAA
Sbjct:   62 KLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDES-GPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVI-----GKDEKYTLYDQNDTKEWLDKLGDKGPAA 243          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 43/178 (24.16%), Postives = 83/178 (46.63%), Query Frame = -2
Query:  218 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLS-KTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 742
            +YK+ D++ C   GI+ D+    + A  +   + + +   +P   L + + D  Q  TQ    RP GV+ +  G D   G QL+  DP+G + G+K            + L++ +K +  +S++E +Q++L V++  T+ S      K    E+ +      K+ + + E +   L K
Sbjct:   68 LYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSLIVMAISTLQSVLGADLKSSDLEIGICTMDNRKFVIMTDEDIDSQLTK 245          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.216e-11
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = -2
Query:  455 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 745
            K +K+D+HV  A++G+++D   L    R +   Y Y +    P+  L   +    Q + QF G RPFGV  L AG+D+  G +LY + PSG+   +K
Sbjct:   63 KAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQ-GPRLYQTVPSGDVFDFK 158          
The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PSA1_YEAST2.920e-1231.41Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA6A_ARATH4.980e-1229.71Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA1_CAEEL6.504e-1236.67Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA1_SCHPO8.495e-1229.79Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA6_DICDI2.472e-1124.16Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA1_TRYBR4.216e-1135.05Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTAGGTAAACTGCATCCAACATCATAACATCTGCCAT
TACCAAGCTTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTG
GGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATT
AAGTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCA
GGTTGCGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGA
GCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTA
ATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGC
ACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTA
ATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAG
CAGCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGG
AAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAACGG
GCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATT
GAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGT
TGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTCGCATCAGACATTAT
TCCAGCTACGGCACAAGCAACGTGATCATCAATCTTGTACATCTTC
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