CF834747

Overview
NameCF834747
Unique NameCF834747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 60/158 (37.97%), Postives = 92/158 (58.23%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD--TKQGYTQFGG----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+++ID H+ CA++G+ +DA  +I  ARVQ Q + + Y EP  +E   QS+CD   + G  + G      RPFGV+ L AG D+ +G QLY S+PSG Y  ++           +S L +++  D++ EEA  L LKVL + M+   L S  ++LA+V
Sbjct:   66 KLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDE-HGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEE-KLDSKNVQLAKV 221          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 745
            K+ K+DDH+    AG+ +D+ +LI+ A ++ Q Y    ++   VE + + +   +Q YTQ GG+RPFG+S L  G+D +    LY +DPSG+Y  WK              L+++Y  D+S EE+++LA++ L + ++S
Sbjct:   64 KIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYTQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNY-TDVSEEESIKLAVRALLEIVES 201          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20
Identity = 54/155 (34.84%), Postives = 90/155 (58.06%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+ +ID+H+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ +  D++ +EA  +AL +L + M+   +T + +++A+V
Sbjct:   66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.708e-20
Identity = 58/179 (32.40%), Postives = 99/179 (55.31%), Query Frame = -2
Query:  224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 745
            K+ +ID H+   ++G+++DA IL++ ARV+AQ + + Y EPM VE    + CD    + + GG      RPFGVS L AG D+N G QL+ +DPSG Y  +            Q++  + Y  +++ EEA  L +++L + M+   LT   +E+A   ++P    + Q+   E + +++
Sbjct:   66 KILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDEN-GPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENLTVQILRQVMEE-KLTKTSVEIA---IVPVSTGRLQIYDQEQIQRII 239          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 56/174 (32.18%), Postives = 98/174 (56.32%), Query Frame = -2
Query:  224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 745
            K+  IDD VA   +G+++DA +LI+ AR+  Q+    Y   M +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D + G +L+  DP+G    +K            + L+++YK+++S +EA+++ +  L   +   S     ++  E+  +  G+  + V + E +SK L
Sbjct:   66 KIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLD-SIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSEDEAIRMGIAALKSAVADES----SMKEPEIASIKMGET-FHVFTSEEVSKYL 233          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 745
            K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK D S +E ++LA++ L + ++S
Sbjct:   62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRALLEVVES 200          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 745
            K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK D S +E ++LA++ L + ++S
Sbjct:   62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRALLEVVES 200          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 49/140 (35.00%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 745
            K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK+  + +E V+LA++ L + ++S
Sbjct:   62 KIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-AGQETVKLAIRALLEVVES 200          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 53/155 (34.19%), Postives = 90/155 (58.06%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+ +ID+H+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q++CD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ Y  +++ +EA  +AL +L + M+   +T + +++A+V
Sbjct:   66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIALSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K++KID+H+  A +G+++DA  L+  ARV+AQ     Y EP+ V+ L + LCD  Q YTQ GG+RPFG + +  G       +L+ +DPSG    +K             I +  YKDD++  EA+ LAL  +++  +  + T++ +E+A +
Sbjct:   67 KIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFGSALIIGGVYDGI-CKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINEATEHET-TANNVEIAVI 216          
The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PSA5_SCHPO1.001e-2037.97Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA7_DICDI1.308e-2034.53Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA5_SOYBN1.308e-2034.84Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA5_TRYBB1.708e-2032.40Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSMA_PICTO2.230e-2032.18Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSA7A_ORYSJ2.230e-2036.43Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI2.230e-2036.43Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ARATH2.230e-2035.00Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA5_ORYSJ2.230e-2034.19Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSMA_METS32.913e-2034.87Proteasome subunit alpha OS=Methanobrevibacter smi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTAGGTAAACTGCATCCAACATCATAACATCTGCCAT
TACCAAGCTTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTG
GGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATT
AAGTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCA
GGTTGCGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGA
GCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTA
ATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGC
ACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTA
ATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAG
CAGCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGG
AAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAACGG
GCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATT
GAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGT
TGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTCGCATCAGACATTAT
TCCAGCTACGGCACAAGCAACGTGATCATCAATCTTGTACATCTTC
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