CF834747

Overview
NameCF834747
Unique NameCF834747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:322..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 48/162 (29.63%), Postives = 93/162 (57.41%), Query Frame = -2
Query:  260 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKY 745
            K+YK+D+H+  A AG+ +DA +++N A+++ QR+  +Y++ + V+ LV+ +   +Q  TQ  G RP+GVS +  G+++N   QL+ ++PSG    W               ++++Y+D ++R+  V  A+K L + ++S S      +  E+ ++  GK  Y
Sbjct:   61 KIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQRSTQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQDGMTRDRCVHFAIKALLEAVESGS------KNIELLVLERGKAAY 216          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 50/152 (32.89%), Postives = 88/152 (57.89%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+++ID+H+  A +G+++DA  +I  AR++AQ     Y EP+ VE L + +CD KQ YTQ GG+RPFG + +  G +   G +L+ +DPSG    +K               ++ Y DD++  +A++LAL  + +  +  + T + +E+A +
Sbjct:   67 KIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVN-GRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEATEGKT-TPESVEIAVI 216          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 50/152 (32.89%), Postives = 87/152 (57.24%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+  +  ++    +G+  D  +L+  +R QA++Y   Y+EP+PV QLV+      Q +TQ GG+RPFGVS L AG+D + G QLY  DPSG+Y  WK           ++ L++ Y +D+  ++A+  A+  L +  +   ++S  +E+ ++
Sbjct:   64 KIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEG-EISSKNIEIGKI 213          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 50/152 (32.89%), Postives = 87/152 (57.24%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+  +  ++    +G+  D  +L+  +R QA++Y   Y+EP+PV QLV+      Q +TQ GG+RPFGVS L AG+D + G QLY  DPSG+Y  WK           ++ L++ Y +D+  ++A+  A+  L +  +   ++S  +E+ ++
Sbjct:   64 KIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEG-EISSKNIEIGKI 213          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20
Identity = 57/152 (37.50%), Postives = 88/152 (57.89%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K++K DDH+  A AG ++DA  LI+ AR Q+Q     Y EP+ +E L + + D  Q YTQ GG RPFGV+ L  G + N   +LY +DPSG    WK           Q  L+++++DD++ +E ++LAL+ ++ T D      D +++A V
Sbjct:   68 KIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVE-NGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDE-GTAPDGVDVATV 217          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = -2
Query:  296 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQ-LYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 745
            K+ +I  H+ C  +G+  D  IL+  AR  A  Y   Y E MP  QLV  +    Q YTQ GG+RPFG S L AGWDKN G   L+  DPSG Y  WK           ++ L++ + + +  ++ +  AL  L ++ D   +  + +E+A
Sbjct:   60 KVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFD-VGMNENNVEVA 209          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = -2
Query:  329 KMYKIDDHVACAVA------GIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDS 745
            K+  +DDHV  A A      G+ +DA ++IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y +D   S  EA++LA+K L + + S
Sbjct:   63 KICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQS 209          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 54/174 (31.03%), Postives = 94/174 (54.02%), Query Frame = -2
Query:  224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 745
            K+  +  ++    +G+  D  +L+  +R QAQ+Y   Y+E +PV QLV+      Q +TQ GG+RPFGVS L AG+D N G QLY  DPSG+Y  WK           ++ L++ Y +D+  ++A+  A+  L +  +   ++++ +E+  +        +++V SP  +   L
Sbjct:   64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEG-QISANNIEIGII----RSDREFKVLSPAEIKDFL 231          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 54/174 (31.03%), Postives = 94/174 (54.02%), Query Frame = -2
Query:  224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 745
            K+  +  ++    +G+  D  +L+  +R QAQ+Y   Y+E +PV QLV+      Q +TQ GG+RPFGVS L AG+D N G QLY  DPSG+Y  WK           ++ L++ Y +D+  ++A+  A+  L +  +   ++++ +E+  +        +++V SP  +   L
Sbjct:   64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEG-QISANNIEIGII----RSDREFKVLSPAEIKDFL 231          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 745
            K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y DD    +   ++L +K L + + S
Sbjct:   61 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQS 201          
The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PSA7_TRYBB2.913e-2029.63Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSMA_METTH3.804e-2032.89Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSA2B_ARATH4.969e-2032.89Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH4.969e-2032.89Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSMA1_HALVO6.489e-2037.50Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSA2_CAEEL6.489e-2035.10Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA7L_HUMAN8.475e-2036.05Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA2_ORYSJ1.107e-1931.03Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI1.107e-1931.03Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA7_MOUSE1.446e-1935.46Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTAGGTAAACTGCATCCAACATCATAACATCTGCCAT
TACCAAGCTTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTG
GGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATT
AAGTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCA
GGTTGCGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGA
GCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTA
ATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGC
ACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTA
ATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAG
CAGCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGG
AAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAACGG
GCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATT
GAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGT
TGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTCGCATCAGACATTAT
TCCAGCTACGGCACAAGCAACGTGATCATCAATCTTGTACATCTTC
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