CF834748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 1.253e-41 Identity = 95/218 (43.58%), Postives = 125/218 (57.34%), Query Frame = 3 Query: 3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656 IMVVSVTASTT G+ L E+ L++ +VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+ + GY+ ++I QS PP LR +A RL+AAK TLAARVDS G G ++EI +K +KWQE +T++RK ANRM FG Sbjct: 164 IMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFG 381
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 2.792e-41 Identity = 94/218 (43.12%), Postives = 125/218 (57.34%), Query Frame = 3 Query: 3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656 IMVVSVTASTT G+ L ++ L++ +VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+ + GY+ ++I QS PP LR +A RL+AAK TLAARVDS G G ++EI +K +KWQE +T++RK ANRM FG Sbjct: 164 IMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFG 381
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40 Identity = 95/218 (43.58%), Postives = 124/218 (56.88%), Query Frame = 3 Query: 3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656 IMVVSVTASTT G+ L ++ L++ +VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACNV LLGA++K L GFS+ + GY+ +EI QS P L +A RL++AK TLA+RVDS +P G G +EEI +K +KWQE +T++RK ANRM FG Sbjct: 163 IMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLTGFSSTSVLPHTGYIYHSEIVQSLPSDLHRKAARLVSAKCTLASRVDSFHENPEGKIGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFG 380
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.032e-40 Identity = 94/217 (43.32%), Postives = 123/217 (56.68%), Query Frame = 3 Query: 3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLF 653 IMVVSVTASTT G+ L ++ L++ +VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACNV LLGA++K L+GFS+ + GY+ ++I QS PP L +A RL++AK TLAARVDS G G +EEI +K +KWQE +T++RK ANRM F Sbjct: 163 IMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLHRKAARLVSAKCTLAARVDSFHESSEGKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSF 379
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39 Identity = 92/217 (42.40%), Postives = 122/217 (56.22%), Query Frame = 3 Query: 3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLF 653 IMVVSVTASTT G L +D LQ+ +VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACN+ LLGA+++ L+GFS+ + GY+ ++ Q+ PP LR +A RL++AK TLA+RVDS G G +EEI +K +KWQE +T++RK ANRM F Sbjct: 175 IMVVSVTASTTQGTMLGDDELQRLEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGVAGGLTNLSKMPACNLMLLGAQRRTLSGFSSTSLLPHTGYIYHCDVVQTLPPDLRRKAARLVSAKCTLASRVDSFHESADGKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKHANRMTF 391
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_SCHPO (Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe GN=prp31 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37 Identity = 84/218 (38.53%), Postives = 118/218 (54.13%), Query Frame = 3 Query: 3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656 +MV++ TA+TT GKPLP+++++ +V+SR+S +APNLSA+VGS AA L+G AGGL+ L K PACN+ LG ++ G + G+L +EI Q TPP +R +A R+ AAK LAAR+DS P G+ G S R+E+ +KIEK E D P YAVT++R+L NR+ FG Sbjct: 188 VMVIATTATTTVGKPLPDEMIKNVKNCCEAIQQLGEEKQKIIEYVQSRISVVAPNLSAVVGSTTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTIGINNPAVSGDYGFLYMSEIVQKTPPDVRKQAIRMTAAKVALAARIDSIHEYPDGSFGISARKEVERKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTELRRLQNRVAFG 405
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_YEAST (Pre-mRNA-processing factor 31 OS=Saccharomyces cerevisiae GN=PRP31 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 52/178 (29.21%), Postives = 87/178 (48.88%), Query Frame = 3 Query: 132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFR-VGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS--TRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656 ++ S++S IAPN+ +VG +AA+L+ AGG+ +++P+CN+ +G K T S R GYL +++ Q P + + R+L AK +LAARVD+ GD + ++ E+ KK K E + +P + ++ +R+L NRM FG Sbjct: 217 YIASKISIIAPNVCFLVGPEIAAQLIAHAGGVLEFSRIPSCNIASIGKNKHLSHELHTLESGVRQEGYLFASDMIQKFPVSVHKQMLRMLCAKVSLAARVDAGQKNGDRNTVLAHKWKAELSKKARKLSEAPSISETKALPIPEDQPKKKRAGRKFRKYKEKFRLSHVRQLQNRMEFG 394
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: YZVL_CAEEL (Uncharacterized NOP5 family protein K07C5.4 OS=Caenorhabditis elegans GN=K07C5.4 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14 Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 3 Query: 132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIE 500 +++ RM + AP+LSA++G V A+L+ AG L+ LAK PA VQ+LGA+K T ++ + G L + + R R LA K ++AARVD P T G R+++ ++E Sbjct: 290 YIKDRMDHCAPSLSALIGEQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYGLLFHSSFIGKAGTKNKGRVSRYLANKCSIAARVDCFSETPVSTYGEFLRQQVEDRLE 412
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP56_PONAB (Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14 Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3 Query: 132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 509 ++ S+MS +AP+LSA++G AV A+L+ AG L+ LAK PA VQ+LGA+K T + + G + + + R R LA K ++A+R+D P+ G RE++ +++ ++ Sbjct: 284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP56_MOUSE (Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14 Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3 Query: 132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 509 ++ S+MS +AP+LSA++G AV A+L+ AG L+ LAK PA VQ+LGA+K T + + G + + + R R LA K ++A+R+D P+ G RE++ +++ ++ Sbjct: 284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409 The following BLAST results are available for this feature:
BLAST of CF834748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834748 ID=CF834748; Name=CF834748; organism=Citrus sinensis; type=EST; length=721bpback to top |