CF834748

Overview
NameCF834748
Unique NameCF834748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP56_MACFA (Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 509
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP56_HUMAN (Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 509
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP56_BOVIN (Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 509
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_PICST (Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS--TRGDPSGTAGRSFREEIHKKI 497
            ++ SRM  IAPNL+A+VG  V A+L+  AG L++LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ +A R DS     D SG  G   R ++  ++
Sbjct:  275 YLSSRMKAIAPNLTALVGELVGARLIAHAGSLTSLAKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGKNKGKIARVLAAKAAVALRYDSLAEERDDSGDFGLEVRAKVESRL 398          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_DEBHA (Nucleolar protein 58 OS=Debaryomyces hansenii GN=NOP58 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKI 497
            ++ SRM  IAPNL+A+VG  V A+L+  +G L++LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ +A R DS     D SG  G S R ++  ++
Sbjct:  275 YLSSRMKAIAPNLTALVGELVGARLIAHSGSLTSLAKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGKNKGKIARVLAAKAAVALRYDSLAEDRDDSGDFGLSVRTKVESRL 398          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_PICGU (Nucleolar protein 58 OS=Pichia guilliermondii GN=NOP58 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVD--STRGDPSGTAGRSFREEIHKKI 497
            ++ +RM  IAPNL+A+VG  + A+L+  AG L++L+K PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ +A R D  S   D SG  G S R ++  ++
Sbjct:  275 YLSARMKAIAPNLTALVGELIGARLIAHAGSLTSLSKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVALRYDSLSEERDDSGDFGFSVRAKVESRL 398          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 497
            +++SRM+ IAPNL+A+VG  V A+L+   G L  L+K P   VQ+LGA+K       T  +  + G +    +     P  + +  R LAAK+ LA RVD+       T G   R ++  ++
Sbjct:  273 YLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLSKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASLVGQAAPKHKGKISRSLAAKTVLAIRVDALGDSQDNTMGLENRAKLEARL 394          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP5A_ARATH (Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 497
            +++SRM+ IAPNL+A+VG  V A+L+   G L  LAK P   VQ+LGA+K       T  +  + G +    +     P  + +  R LAAKS LA R D+       T G   R ++  ++
Sbjct:  272 YLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASVVGQAAPKNKGKISRSLAAKSVLAIRCDALGDSQDNTMGVENRLKLEARL 393          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_USTMA (Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 42/128 (32.81%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS-----TRGDPSG-TAGRSFREEIHKKI 497
            ++++RM+ IAPNL+A+VG  V A+L+  AG L  LAK PA  VQ+LGA+K       T     + G +  + +    P  L+ +  R++A K+ L+ R+D+     T+ D    T G   R ++  ++
Sbjct:  285 YLQNRMAAIAPNLTALVGDLVGARLISHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHSSLVGQAPQKLKGKMARMVATKAALSIRLDALADADTKSDEGAPTVGIEARAKLESRL 412          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_CRYNE (Nucleolar protein 58 OS=Cryptococcus neoformans GN=NOP58 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 434
            ++ +RM  IAPNL+A+VG  V A+L+  AG L  LAK PA  VQ+LGA+K       T     + G +    +    P  L+ +  R++A K+ L+ RVD+
Sbjct:  285 YLRNRMQAIAPNLTALVGELVGARLISHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAPQKLKGKMARMVATKAALSIRVDA 385          
The following BLAST results are available for this feature:
BLAST of CF834748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NOP56_MACFA6.483e-1432.54Nucleolar protein 56 OS=Macaca fascicularis GN=NOP... [more]
NOP56_HUMAN6.483e-1432.54Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1... [more]
NOP56_BOVIN6.483e-1432.54Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 S... [more]
NOP58_PICST4.202e-1335.48Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 P... [more]
NOP58_DEBHA4.202e-1335.48Nucleolar protein 58 OS=Debaryomyces hansenii GN=N... [more]
NOP58_PICGU1.223e-1233.87Nucleolar protein 58 OS=Pichia guilliermondii GN=N... [more]
NOP5B_ARATH2.085e-1233.61Probable nucleolar protein 5-2 OS=Arabidopsis thal... [more]
NOP5A_ARATH2.724e-1234.43Probable nucleolar protein 5-1 OS=Arabidopsis thal... [more]
NOP58_USTMA2.724e-1232.81Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 P... [more]
NOP58_CRYNE3.557e-1237.62Nucleolar protein 58 OS=Cryptococcus neoformans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834748 ID=CF834748; Name=CF834748; organism=Citrus sinensis; type=EST; length=721bp
TTATCATGGTGGTGTCCGTCACAGCATCAACTACAAGTGGCAAACCACTT
CCAGAAGATGTCCTTCAAAAGACAATTGATGCATGTGATCGAGCTCTTGC
ACTTGATGCAGCAAAGAAGAAGGTCCTTGATTTTGTAGAAAGCAGGATGA
GCTATATTGCGCCCAATCTATCTGCAATTGTTGGCAGTGCTGTTGCAGCA
AAACTCATGGGAACGGCTGGTGGTCTCTCAGCATTAGCTAAGATGCCTGC
TTGTAACGTTCAGCTTCTTGGCGCAAAGAAAAAGAATCTTGCTGGTTTTT
CTACTGCAACATCTCAATTCCGTGTAGGTTATCTTGAGCAGACAGAGATA
TTTCAAAGTACACCTCCACCTCTAAGGATGCGTGCCTGCCGACTCTTGGC
TGCAAAATCAACACTTGCAGCACGTGTTGATTCTACTAGAGGAGATCCTT
CTGGAACTGCTGGGAGGTCATTCAGAGAAGAGATTCACAAGAAAATTGAA
AAGTGGCAAGAGCCTCCTCCTGCAAAGCAACCTAAACCTCTTCCAGTTCC
TGATTCTGAGCCTAAAAAGAAGAGGGGTGGTCGACGGTTAAGGAAGATGA
AAGAAAGATATGCTGTAACAGATATGAGAAAGCTGGCTAATAGAATGCTA
TTTGGTGTACCTGAAGAAAGTTCCTTAGGTGATGGATTGGGAGAGGGTTA
TGGAATGCTTGGTCAAGCTGG
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