CF834763

Overview
NameCF834763
Unique NameCF834763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834763_ssr78 microsatellite CF834763_ssr78:78..95. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834763_ssr158 microsatellite CF834763_ssr158:158..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2397 contig Csv1_Contig2397:104..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.284e-13
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = -3 
Query:  221 DLWG-PFSDF----PSLSRGIFPTR---QTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 556
            DLW  PF  F    P++S G   T      +++W ETP AH+FK   PG+  ++V V V++  +L +S +                   GKF  RF+LP +A  ++VKA +  G+LTVTV K    +P+ V+ +EI+G
Sbjct:   15 DLWADPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPE-VKAIEISG 151
[Close]
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = -3 
Query:  221 DLWG-PFSDF----PSLSRGIFPTR---QTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 556
            DLW  PF  F    P++S G   T      +++W ETP AH+FKA  PG+  ++V V V++  +L +S +                   GKF  RF+L  +A  ++VKA +  G+LTVTV K    +P+ V+ ++I+G
Sbjct:   15 DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPE-VKAIQISG 151
The following BLAST results are available for this feature:
BLAST of CF834763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HS16A_WHEAT5.284e-1334.7816.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16B_WHEAT1.700e-1134.0616.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834763 ID=CF834763; Name=CF834763; organism=Citrus sinensis; type=EST; length=609bp
TTTTTTTTTTTTTTTTTATTTGCAATGATAATTGATATTGATAATTTGAG
TTTTACAATATCCAAAATTACAACATAACACACACACACACACACATCTC
GAATGCTCTGCACAGTACTACACAAGTCTACACTTCAAACCAAACACAAG
CTCACATTATATATATATATATATATATATATAGGCGCAATAATATCACA
AACCCAGAAATTTAGTCAGACCCAGTAATTTCAACAACCCTAACATTTTG
TGGCTGCAGTGACATCTCCTTAGAGACTGTAACAGTGAGCAACCCATAAT
TCATGGAAGCCTTGACCTGATCGGTAATAGCATTAGCAGGCAGCTTAAAC
CTGCTCGTGAACTTGCCATCATCGGTGCTTATTTGGAGCATTCTGTCTTC
ATCGACGAACACTATCACTTGGTCTCCCGTAAGCCCTGGAAAGTAAGCTT
TGAACAAGTGGGCTCTCGGGGTCTCACTCCAGTTGATCTGGGTTTGACGG
GTTGGAAAAATCCCCCGGGAAAGTGAAGGAAAATCACTGAATGGGCCCCA
AAGGTCAATAGATAAGGGGAATTCTTCTAGAAAGTTCTGGAAGGGACCCC
ATACTTCTG
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