CF834778

Overview
NameCF834778
Unique NameCF834778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_PROMA (Hydroxyacylglutathione hydrolase OS=Prochlorococcus marinus GN=gloB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20
Identity = 61/181 (33.70%), Postives = 94/181 (51.93%), Query Frame = 3
Query:   54 LDNVKGCTHQVENGDKFSI-GAHVNVLSLHTPCHTKGRISYYVTG-KEGE-DPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFNDPIEALREIRKRKDNWR 587
            LD ++  T  V + ++  I G  + V+ +  P HT   I +++ G KE + DP +F GDTLF AGCG+ FEG+ EQM+ SL   + +LP+ T++YC HEYT  NL +A ++   ++               G  +IPS + EE +TN F+R                    ++R  KDNW+
Sbjct:   87 LDRIQFQTKSVVDNEELDILGQKIKVIEV--PGHTSNHICFFLQGSKESKIDPVLFCGDTLFGAGCGRLFEGTPEQMFNSLS-RINNLPKNTKIYCAHEYTEANLRWAKSIFPEDIYIEERLKEVILRKSKGFLSIPSKLSEERKTNLFIRASNQ------------REFAQLRLHKDNWK 252          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_TOLAT (Hydroxyacylglutathione hydrolase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=gloB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 62/155 (40.00%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  138 HTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPEL-------QELVGFNDPIEALREIRKRKDN 581
            HTP HT   I ++  G      A+F GDTLF  GCG+ F G+AEQMY SL   L SLP+ T VY  HEYT  NL + L  E  NV               G PT+PSTI  E ++N F+R  +P +        EL   N+ I+    +R++K+N
Sbjct:  109 HTPGHTAEHIVFHGHG------ALFCGDTLFSGGCGRLFSGTAEQMYHSL-QRLASLPEDTLVYPAHEYTYNNLSYCLQAEPDNVFTIKRIKEVSKLRQQGCPTLPSTIGIEKQSNVFLRTHMPSVAVFAQNSSELYLENE-IQIFAILREKKNN 255          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_THIDA (Hydroxyacylglutathione hydrolase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gloB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 68/193 (35.23%), Postives = 90/193 (46.63%), Query Frame = 3
Query:   39 VYGGPLDNVKGCTHQVENGDKFSI---GAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQEL----VGFNDPIEA--LREIRKRKDNWRG 590
            +Y      +   +H V  GD  ++   G  + VL+  TP HT   +SY   G       +F GDTLF  GCGK FEG A  M  SL   L +LP  T+V C HEYT+ N+ FA T++  N                  PT+PST+  E  TNPF+R    +++      +G  DP  A     IR  KD W G
Sbjct:   73 IYAPDNPRIPAVSHVVRGGDSVAVPELGLALAVLA--TPGHTLDHVSYVGNGH------LFCGDTLFGCGCGKLFEGDAAMMSASL-DALAALPPTTRVCCAHEYTLSNIDFAKTIDGANPALLERERIDRAARAQNRPTLPSTLALERTTNPFLRFHDADMRAFAVGELGSPDPGPATVFGAIRAAKDRWDG 256          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_ERYLH (Hydroxyacylglutathione hydrolase OS=Erythrobacter litoralis (strain HTCC2594) GN=gloB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.764e-20
Identity = 58/177 (32.77%), Postives = 85/177 (48.02%), Query Frame = 3
Query:   54 LDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFNDPIEALREIRKRKDNW 584
            ++ + G    V +GD   IG     + +    HT G I+Y++     E    F GD++F  GCG+ FEG  +Q + SL   + +LP  T +YC HEYT  N  FA+  +  N                  PT+P+ ++ EL TNPF+R D P L    G + P E    +R  KDN+
Sbjct:   81 VEKLSGIDRVVGHGDTVDIGDFTADV-IDVSGHTNGHIAYHLP----EAGIAFVGDSVFALGCGRMFEGEPKQFWDSLS-RIKALPPETMLYCAHEYTAANARFAVHADPENDALVAYVEEITAKRERDEPTVPTQLKRELATNPFLRADDPALVAKWGGDAPHETFAALRAGKDNF 251          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_ECOL6 (Hydroxyacylglutathione hydrolase OS=Escherichia coli O6 GN=gloB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.764e-20
Identity = 66/199 (33.17%), Postives = 99/199 (49.75%), Query Frame = 3
Query:   12 MKEMV---PGIKVYGGPLDNVKGCTHQVENGDK-FSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVG----FNDPIEALREIRKRKDNW 584
            +KE+V   P I VYG      KG T  V++ +  F +G   +V++  TP HT G I Y+        P +F GDTLF  GCG+ FEG+  QMYQS+   L +LP  T V C HEYT+ N+ FAL++   ++                  T+P  ++ E + N F+R +  +L  ++        P E    +R +KD +
Sbjct:   62 VKELVKKFPQIVVYGPQETQDKGTTQVVKDSETAFVLGHEFSVIA--TPGHTLGHICYF------SKPYLFCGDTLFSGGCGRLFEGTPSQMYQSI-KKLSALPDDTLVCCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLRTEDIDLINVINEETLLQQPEERFAWLRSKKDRF 251          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_AERS4 (Hydroxyacylglutathione hydrolase OS=Aeromonas salmonicida (strain A449) GN=gloB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.764e-20
Identity = 65/188 (34.57%), Postives = 98/188 (52.13%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQ-VENGDKFSI-GAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFNDPIEALREIRKRKDNW 584
            P  ++YG   D +     Q +++GD+ +  G  ++V+  H P HT G I+Y+  G       +F GDTLF  GCG+ FEG+  QM+ SL   L +LP  T +YC HEYT+ NL FA  VE  N                GLP++PS + +E + N F+R +    Q+ V F+    AL+ +   +D +
Sbjct:   70 PHARLYGPKHDPMPDHHGQWLDDGDQINWHGLSLDVI--HVPGHTHGHIAYHGHGM------LFCGDTLFSGGCGRLFEGTPAQMHDSL-QRLAALPDDTLIYCAHEYTLSNLRFAYAVEPDNKAIQQRIGMISKLRQQGLPSLPSRLGDERDFNVFLRCE----QDSVKFSAEKYALKCLENPEDTF 244          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_NEIG2 (Hydroxyacylglutathione hydrolase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=gloB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.528e-20
Identity = 66/189 (34.92%), Postives = 92/189 (48.68%), Query Frame = 3
Query:   39 VYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQE----LVG--FNDPIEALREIRKRKDNWR 587
            VYG    +++  TH V  G +F+ G +  V    TP HT    SY +   +G    VF GDTLF AGCG+ F G+ EQ+Y S       LP+ T  Y  HEYT  NL FA  +E  N                  PT+P T+  E   NPF+R ++P +++    LVG   N  +E    +R+ K+ +R
Sbjct:   73 VYGE--SDIEAATHTVTAGTRFTFG-NGQVTVWATPGHTDRHTSYLLETSDGIH--VFCGDTLFSAGCGRVFTGTVEQLYDSF-QRFNQLPEGTLFYPAHEYTAANLRFAAHIEPDNADIQTALKAAER-----TPTLPVTLAHERRVNPFLRTEIPAVRQRAEALVGKTLNSGLEVFAALRELKNAYR 250          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SHEB5 (Hydroxyacylglutathione hydrolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gloB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.832e-20
Identity = 63/168 (37.50%), Postives = 81/168 (48.21%), Query Frame = 3
Query:   33 IKVYGGPLDNVKGCTHQVENG--DKFSIGAHVNVLS-LHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELV 527
            + VYG   + ++G TH +      +F +      L  L  P HT G I+Y +        A+F GDTLF AGCG+ FEG+  QM  SL   L  LP  T+VYC HEYT+ NL FAL V   N                   TIPSTI  E   NPF+R    E+ + +
Sbjct:   75 LTVYGPDNEKIEGITHPLNATAQPRFILDYMSGELQVLDVPGHTAGHIAYVIAD------ALFCGDTLFSAGCGRLFEGTPAQMLNSL-QQLAQLPADTRVYCAHEYTLSNLKFALAVNPNNRALQDYNERAVALRRQDKATIPSTIALERAINPFLRASDTEIVDSI 235          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALPK (Hydroxyacylglutathione hydrolase OS=Salmonella paratyphi A (strain AKU_12601) GN=gloB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.832e-20
Identity = 61/190 (32.11%), Postives = 90/190 (47.37%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V++GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVDDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALPA (Hydroxyacylglutathione hydrolase OS=Salmonella paratyphi A GN=gloB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.832e-20
Identity = 61/190 (32.11%), Postives = 90/190 (47.37%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V++GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVDDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251          
The following BLAST results are available for this feature:
BLAST of CF834778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GLO2_PROMA2.587e-2033.70Hydroxyacylglutathione hydrolase OS=Prochlorococcu... [more]
GLO2_TOLAT3.379e-2040.00Hydroxyacylglutathione hydrolase OS=Tolumonas auen... [more]
GLO2_THIDA3.379e-2035.23Hydroxyacylglutathione hydrolase OS=Thiobacillus d... [more]
GLO2_ERYLH5.764e-2032.77Hydroxyacylglutathione hydrolase OS=Erythrobacter ... [more]
GLO2_ECOL65.764e-2033.17Hydroxyacylglutathione hydrolase OS=Escherichia co... [more]
GLO2_AERS45.764e-2034.57Hydroxyacylglutathione hydrolase OS=Aeromonas salm... [more]
GLO2_NEIG27.528e-2034.92Hydroxyacylglutathione hydrolase OS=Neisseria gono... [more]
GLO2_SHEB59.832e-2037.50Hydroxyacylglutathione hydrolase OS=Shewanella bal... [more]
GLO2_SALPK9.832e-2032.11Hydroxyacylglutathione hydrolase OS=Salmonella par... [more]
GLO2_SALPA9.832e-2032.11Hydroxyacylglutathione hydrolase OS=Salmonella par... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06B17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834778 ID=CF834778; Name=CF834778; organism=Citrus sinensis; type=EST; length=607bp
GGGAACGAACGATGAAGGAGATGGTGCCTGGGATTAAGGTGTATGGTGGC
CCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAAAATGGTGATAA
GTTCTCAATTGGAGCTCATGTCAATGTACTGTCTCTTCACACACCTTGCC
ATACCAAAGGTCGCATAAGTTATTATGTGACTGGAAAAGAGGGAGAAGAC
CCAGCTGTTTTCACTGGAGACACACTGTTTGTTGCTGGTTGTGGAAAATT
TTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTGCGTGACATTGG
GCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATGAGTACACAGTG
AAGAACCTACTATTTGCTCTTACTGTCGAAGCAGGCAATGTGAAGCTACA
GCAAAAATTGGCGTGGGCTCAGAACCAGCAGCAAGCTGGCTTGCCAACCA
TTCCCTCAACCATTGAGGAAGAGTTGGAGACGAACCCCTTCATGCGTGTT
GATCTACCAGAGCTTCAGGAGTTGGTTGGTTTCAATGATCCCATTGAAGC
TCTCCGGGAGATAAGGAAGCGAAAGGACAATTGGAGAGGCTGATTAAGGA
CCTGCAT
back to top