CF834778

Overview
NameCF834778
Unique NameCF834778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_PSEU2 (Hydroxyacylglutathione hydrolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gloB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 51/126 (40.48%), Postives = 69/126 (54.76%), Query Frame = 3 
Query:  144 PCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQE 521
            P HT G I++Y   ++   P +F+GDTLF AGCG+ FEG+ +QM+ SL   L  LP  T +YC HEYT+ NL FA  VE  NV                  ++PS +  E  TNPF+R     ++E
Sbjct:  110 PGHTLGHIAFY--HEDATTPLLFSGDTLFAAGCGRLFEGTPQQMHDSL-GRLAKLPDSTLIYCAHEYTLSNLRFAQAVEPANVDIAERLAEVTRWRSENRISLPSNMALEKRTNPFLRTGETSVKE 232
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SHEON (Hydroxyacylglutathione hydrolase OS=Shewanella oneidensis GN=gloB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 58/140 (41.43%), Postives = 74/140 (52.86%), Query Frame = 3 
Query:  108 IGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELV 527
            + + V VLS+  P HT G I+Y V G      A+F GDTLF  GCG+ FEG+  QM  SL + L +LP  T+VYC HEYT+ NL FA   +  N                G  TIPSTI  E   NPF+R   P + + +
Sbjct:  109 LNSPVQVLSV--PGHTAGHIAYLVDG------ALFCGDTLFSGGCGRLFEGTPAQMCHSLRL-LAALPAETRVYCAHEYTLANLKFAQAADPSNAKLKAYNEQATALRAQGKATIPSTIGLERSINPFLRGLTPTIVDSI 239
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SHEB8 (Hydroxyacylglutathione hydrolase OS=Shewanella baltica (strain OS185) GN=gloB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 62/168 (36.90%), Postives = 80/168 (47.62%), Query Frame = 3 
Query:   33 IKVYGGPLDNVKGCTHQVENG--DKFSIGAHVNVLS-LHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELV 527
            + VYG   + ++G TH +      +F +      L  L  P HT G I+Y +        A+F GDTLF  GCG+ FEG+  QM  SL   L  LP  T+VYC HEYT+ NL FAL V   N                   TIPSTI  E   NPF+R    E+ + +
Sbjct:   75 LSVYGPDNEKIEGITHPLHATAQPRFILDYMSGELQVLDVPGHTAGHIAYVIAD------ALFCGDTLFSGGCGRLFEGTPAQMLNSL-QQLAQLPADTRVYCAHEYTLSNLKFALAVNPNNRALQDYNERAIALRRQEKATIPSTIALERAINPFLRASDTEIVDSI 235
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALSV (Hydroxyacylglutathione hydrolase OS=Salmonella schwarzengrund (strain CVM19633) GN=gloB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V +GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALPB (Hydroxyacylglutathione hydrolase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gloB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V +GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALNS (Hydroxyacylglutathione hydrolase OS=Salmonella newport (strain SL254) GN=gloB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V +GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALHS (Hydroxyacylglutathione hydrolase OS=Salmonella heidelberg (strain SL476) GN=gloB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V +GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALG2 (Hydroxyacylglutathione hydrolase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=gloB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V +GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETKDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALCH (Hydroxyacylglutathione hydrolase OS=Salmonella choleraesuis GN=gloB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V +GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251
[Close]
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALA4 (Hydroxyacylglutathione hydrolase OS=Salmonella agona (strain SL483) GN=gloB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V +GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251
The following BLAST results are available for this feature:
BLAST of CF834778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GLO2_PSEU22.190e-1940.48Hydroxyacylglutathione hydrolase OS=Pseudomonas sy... [more]
GLO2_SHEON2.861e-1941.43Hydroxyacylglutathione hydrolase OS=Shewanella one... [more]
GLO2_SHEB82.861e-1936.90Hydroxyacylglutathione hydrolase OS=Shewanella bal... [more]
GLO2_SALSV2.861e-1932.11Hydroxyacylglutathione hydrolase OS=Salmonella sch... [more]
GLO2_SALPB2.861e-1932.11Hydroxyacylglutathione hydrolase OS=Salmonella par... [more]
GLO2_SALNS2.861e-1932.11Hydroxyacylglutathione hydrolase OS=Salmonella new... [more]
GLO2_SALHS2.861e-1932.11Hydroxyacylglutathione hydrolase OS=Salmonella hei... [more]
GLO2_SALG22.861e-1932.11Hydroxyacylglutathione hydrolase OS=Salmonella gal... [more]
GLO2_SALCH2.861e-1932.11Hydroxyacylglutathione hydrolase OS=Salmonella cho... [more]
GLO2_SALA42.861e-1932.11Hydroxyacylglutathione hydrolase OS=Salmonella ago... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06B17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834778 ID=CF834778; Name=CF834778; organism=Citrus sinensis; type=EST; length=607bp
GGGAACGAACGATGAAGGAGATGGTGCCTGGGATTAAGGTGTATGGTGGC
CCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAAAATGGTGATAA
GTTCTCAATTGGAGCTCATGTCAATGTACTGTCTCTTCACACACCTTGCC
ATACCAAAGGTCGCATAAGTTATTATGTGACTGGAAAAGAGGGAGAAGAC
CCAGCTGTTTTCACTGGAGACACACTGTTTGTTGCTGGTTGTGGAAAATT
TTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTGCGTGACATTGG
GCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATGAGTACACAGTG
AAGAACCTACTATTTGCTCTTACTGTCGAAGCAGGCAATGTGAAGCTACA
GCAAAAATTGGCGTGGGCTCAGAACCAGCAGCAAGCTGGCTTGCCAACCA
TTCCCTCAACCATTGAGGAAGAGTTGGAGACGAACCCCTTCATGCGTGTT
GATCTACCAGAGCTTCAGGAGTTGGTTGGTTTCAATGATCCCATTGAAGC
TCTCCGGGAGATAAGGAAGCGAAAGGACAATTGGAGAGGCTGATTAAGGA
CCTGCAT
back to top