CF834778

Overview
NameCF834778
Unique NameCF834778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_YEAST (Hydroxyacylglutathione hydrolase, cytoplasmic isozyme OS=Saccharomyces cerevisiae GN=GLO2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.736e-19
Identity = 60/171 (35.09%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   33 IKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQM----YQSLCVTLGSLP-QPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVG 530
            ++V GG  D  K  T   EN  K  +G  + +  + TPCHT+  I YYV     ++  +FTGDTLF AGCG+FFEG+ E+M      S+  T+G      T+VY GHEYT  N+ F   +                     +     T+++E+E NPFMR++ P++Q+  G
Sbjct:   84 VEVIGGSKDCPK-VTIIPENLKKLHLG-DLEITCIRTPCHTRDSICYYVKDPTTDERCIFTGDTLFTAGCGRFFEGTGEEMDIALNNSILETVGRQNWSKTRVYPGHEYTSDNVKFVRKIYPQVGENKALDELEQFCSKHEVTAGRFTLKDEVEFNPFMRLEDPKVQKAAG 252          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALTY (Hydroxyacylglutathione hydrolase OS=Salmonella typhimurium GN=gloB PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.736e-19
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V +GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVCYF------SRPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDTF 251          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SALPC (Hydroxyacylglutathione hydrolase OS=Salmonella paratyphi C (strain RKS4594) GN=gloB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.736e-19
Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVD----LPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYG      KG TH V +GD   +      L   TP HT G + Y+        P +F GDTLF  GCG+ FEG+  QMYQSL + + SLP  T + C HEYT+ N+ FAL++   +                   T+P  ++ E + N F+R +    + E+ +      P      +R +KD +
Sbjct:   70 PQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVFYF------SHPYLFCGDTLFSGGCGRLFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTENIDLINEINKETILQQPEARFAWLRSKKDTF 251          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRASB (Hydroxyacylglutathione hydrolase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=gloB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.736e-19
Identity = 60/168 (35.71%), Postives = 84/168 (50.00%), Query Frame = 3
Query:   81 QVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFNDPI--EALREIRKRKD 578
            +V +GD   +G  +    L TP HT   +SY        D AVF  DTLF  GCG+ FEG+   M+ SL + L +LP   ++YCGHEYT  N+ FALTV+  N                   TIPS + +E +TN F+R D P +   +        +   E+R+RK+
Sbjct:   92 RVGHGDVIKVG-ELLARVLETPGHTLDHVSYVFDA----DKAVFAADTLFSVGCGRVFEGTYPMMWDSL-LKLRALPDDFRLYCGHEYTASNVKFALTVDGDNEALKARAAEVTRLRAANESTIPSLLGDEKQTNVFLRADDPAVAIKLRMKGATAEQVFGELRERKN 253          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRAJA (Hydroxyacylglutathione hydrolase OS=Bradyrhizobium japonicum GN=gloB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.736e-19
Identity = 61/170 (35.88%), Postives = 85/170 (50.00%), Query Frame = 3
Query:   81 QVENGDKFSIGAHVNVLS--LHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFN--DPIEALREIRKRKD 578
            +V N D   +G   N+L+  + TP HT   ISY    ++     VF  DTLF  GCG+ FEG+   M+ SL + L +LP   ++YCGHEYT  N+ FALTV+  N                  PTIPS + +E   N F+R D P +   +     D      E+R+RK+
Sbjct:   92 RVANADVVKVG---NLLARVVETPGHTLDHISYVFDTEK----TVFAADTLFSIGCGRVFEGTYPMMWDSL-LKLRALPDDFKLYCGHEYTASNVKFALTVDPDNAALQARAAEVAKLRAENKPTIPSLLGDEKRANVFLRADDPSVAARLHMKGADAAAVFGELRERKN 253          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SYNSC (Hydroxyacylglutathione hydrolase OS=Synechococcus sp. (strain CC9605) GN=gloB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 62/166 (37.35%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  111 GAHVNVLS-----LHTPCHTKGRISYYVTGKEGED--PAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFNDPIEALREIRKRKDNWR 587
            G HV VL      +    HT+  I++++   +G +  P +F GDTLF  GCG+ FEGSAEQM+Q+L   L  LP+ TQV C HEYT  NL +A+  +  N                G  ++PS+I  E  TN FM+       EL GF         +R  KD WR
Sbjct:   95 GDHVTVLGETVEVMDVAAHTRAHIAFFLPNPKGAEIRPLLFCGDTLFSGGCGRLFEGSAEQMHQAL-QKLAELPEATQVCCAHEYTEANLQWAVAQQPNNTVLVERYREVRSLRAKGELSLPSSIGLERRTNLFMQAS--SAAEL-GF---------LRSHKDQWR 247          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_PSE14 (Hydroxyacylglutathione hydrolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gloB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 51/126 (40.48%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  144 PCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQE 521
            P HT G I++Y   ++   P +F+GDTLF AGCG+ FEG+ EQM+ SL   L  LP  T +YC HEYT+ NL FA  VE  N                   ++PS +  E  TNPF+R     ++E
Sbjct:  110 PGHTLGHIAFY--HEDATTPLLFSGDTLFAAGCGRLFEGTPEQMHDSL-ERLAKLPDSTLIYCAHEYTLSNLRFAQAVEPDNQDIAQRLAEVIRWRSENRISLPSNLALEKRTNPFLRTRETSVKE 232          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_RHOFD (Hydroxyacylglutathione hydrolase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=gloB PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.373e-19
Identity = 56/135 (41.48%), Postives = 71/135 (52.59%), Query Frame = 3
Query:   93 GDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMR 497
            GD+      +N   +  P HT   I+Y+    +G  P +F GDTLF AGCG+ FEGS  QM  SL  TL +LP  T+V C HEYT+ NL FA  VE  N                  PT+PS+I  E + NPF+R
Sbjct:   89 GDQQLQALGLNFQVIDVPGHTACHIAYFCADVDGA-PLLFCGDTLFSAGCGRLFEGSPAQMLASL-DTLAALPDATRVCCAHEYTLSNLKFACAVEPVNQALTDYTVKAEALRSQQQPTLPSSILLERQINPFLR 221          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_NEIMA (Hydroxyacylglutathione hydrolase OS=Neisseria meningitidis serogroup A GN=gloB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.323e-19
Identity = 66/187 (35.29%), Postives = 91/187 (48.66%), Query Frame = 3
Query:   39 VYGGPLDNVKGCTHQVENGDKFSIG-AHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQE----LVG--FNDPIEALREIRKRKD 578
            VYG    +++  TH V  G +F+ G   V V +  TP HT    SY +   +G    VF GDTLF AGCG+ F G+ EQ+Y S       LP+ T  Y  HEYT  NL FA  +E  N                  PT+P T+  E   NPF+R ++P +++    LVG   N  +E    +R+ K+
Sbjct:   73 VYGE--SDIEAATHTVTAGTQFTFGDGQVTVWA--TPGHTDRHTSYLLETSDGIH--VFCGDTLFSAGCGRVFTGTIEQLYDSF-QRFNRLPENTLFYPAHEYTAANLRFAAHIEPDNADIQTALKAAER-----TPTLPVTLAHERRVNPFLRTEIPAVRQRAEALVGKTLNSGLEVFAALRELKN 247          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SHEB2 (Hydroxyacylglutathione hydrolase OS=Shewanella baltica (strain OS223) GN=gloB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.087e-18
Identity = 60/168 (35.71%), Postives = 78/168 (46.43%), Query Frame = 3
Query:   33 IKVYGGPLDNVKGCTHQVENGDKFSIGAHV---NVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELV 527
            + VYG   + ++G TH +    +  +        +  L  P HT G I+Y +        A+F GDTLF  GCG+ FEG+  QM  SL   L  LP  T+VYC HEYT  NL FAL V   N                   TIPSTI  E   NPF+R    E+ + +
Sbjct:   75 LTVYGPDNEKIEGITHPLNATAQPRLTLDYMSGELQVLDVPGHTAGHIAYVIAD------ALFCGDTLFSGGCGRLFEGTPAQMLNSL-QQLAQLPADTRVYCAHEYTFSNLKFALAVNPNNRALQDYNERAIALRRQDKATIPSTIALERAINPFLRASDTEIVDSI 235          
The following BLAST results are available for this feature:
BLAST of CF834778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GLO2_YEAST3.736e-1935.09Hydroxyacylglutathione hydrolase, cytoplasmic isoz... [more]
GLO2_SALTY3.736e-1932.11Hydroxyacylglutathione hydrolase OS=Salmonella typ... [more]
GLO2_SALPC3.736e-1932.11Hydroxyacylglutathione hydrolase OS=Salmonella par... [more]
GLO2_BRASB3.736e-1935.71Hydroxyacylglutathione hydrolase OS=Bradyrhizobium... [more]
GLO2_BRAJA3.736e-1935.88Hydroxyacylglutathione hydrolase OS=Bradyrhizobium... [more]
GLO2_SYNSC4.880e-1937.35Hydroxyacylglutathione hydrolase OS=Synechococcus ... [more]
GLO2_PSE144.880e-1940.48Hydroxyacylglutathione hydrolase OS=Pseudomonas sy... [more]
GLO2_RHOFD6.373e-1941.48Hydroxyacylglutathione hydrolase OS=Rhodoferax fer... [more]
GLO2_NEIMA8.323e-1935.29Hydroxyacylglutathione hydrolase OS=Neisseria meni... [more]
GLO2_SHEB21.087e-1835.71Hydroxyacylglutathione hydrolase OS=Shewanella bal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06B17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834778 ID=CF834778; Name=CF834778; organism=Citrus sinensis; type=EST; length=607bp
GGGAACGAACGATGAAGGAGATGGTGCCTGGGATTAAGGTGTATGGTGGC
CCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAAAATGGTGATAA
GTTCTCAATTGGAGCTCATGTCAATGTACTGTCTCTTCACACACCTTGCC
ATACCAAAGGTCGCATAAGTTATTATGTGACTGGAAAAGAGGGAGAAGAC
CCAGCTGTTTTCACTGGAGACACACTGTTTGTTGCTGGTTGTGGAAAATT
TTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTGCGTGACATTGG
GCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATGAGTACACAGTG
AAGAACCTACTATTTGCTCTTACTGTCGAAGCAGGCAATGTGAAGCTACA
GCAAAAATTGGCGTGGGCTCAGAACCAGCAGCAAGCTGGCTTGCCAACCA
TTCCCTCAACCATTGAGGAAGAGTTGGAGACGAACCCCTTCATGCGTGTT
GATCTACCAGAGCTTCAGGAGTTGGTTGGTTTCAATGATCCCATTGAAGC
TCTCCGGGAGATAAGGAAGCGAAAGGACAATTGGAGAGGCTGATTAAGGA
CCTGCAT
back to top