CF834778

Overview
NameCF834778
Unique NameCF834778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig516 contig Csv1_Contig516:208..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BART1 (Hydroxyacylglutathione hydrolase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=gloB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.557e-25
Identity = 68/169 (40.24%), Postives = 94/169 (55.62%), Query Frame = 3
Query:   84 VENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFNDPI--EALREIRKRKDNW 584
            +++ +K   G+  ++L+L TP HT G +SYY   K+     +F GDTLF  GCG+ FEG+A QM  SL   L  LP  T +YCGHEYT  N LFALT++  N                   T+P T+ +E  TNPF+R + P +++ +   D    E   EIRKRKDN+
Sbjct:   91 LQSDEKLLFGSQ-SLLALSTPGHTLGALSYYFPEKK----LLFAGDTLFSLGCGRLFEGTAVQMLNSL-KKLCKLPDETLLYCGHEYTKNNALFALTLDPHNQKLQQRAEEVLSLRAKNAMTLPVTLGQEKATNPFLRWNDPAIRKNLSMKDSTDEEVFAEIRKRKDNF 253          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_XANC5 (Hydroxyacylglutathione hydrolase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=gloB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.951e-25
Identity = 66/198 (33.33%), Postives = 102/198 (51.52%), Query Frame = 3
Query:   12 MKEMVPGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVG------FNDPIEALREIRKRKDNWR 587
            +++  P ++++G   + +    HQV +G++  +   V    L  P HT+  I++   G       +F+GDTLF  GCG+ FEG+A QM+ SL   L SLP  T V CGHEYT+ N  FAL V+  N                  PT+P +++ EL TNPF+R   PE++  V        +  ++   E+R+ KD +R
Sbjct:   65 LQQRWPDLELFGPADERIPADAHQVGHGERLRL-LDVEFQVLQVPGHTRSHIAFVADGY------LFSGDTLFSLGCGRMFEGTAPQMFDSL-QRLASLPGETLVCCGHEYTLANAAFALHVDPTNAALQRRQQEAQAMRHAARPTLPISLKSELATNPFLRTGRPEIRAAVAPRAAGELSSEVDVFAELRRWKDEFR 254          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_RHOPS (Hydroxyacylglutathione hydrolase OS=Rhodopseudomonas palustris (strain BisB5) GN=gloB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.772e-25
Identity = 66/169 (39.05%), Postives = 90/169 (53.25%), Query Frame = 3
Query:   81 QVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGF--NDPIEALREIRKRKDN 581
            +VE GD   +G  ++   L TP HT   ISY       +D A+F  DTLF  GCG+ FEG+   M++SL + L  LP   ++YCGHEYT  N+ FALT+E  N                G PTIP T+ EE + N F+R D+P +   VG       +   E+R+RK+N
Sbjct:   92 RVEEGDVVRVGG-LSARVLETPGHTLDHISYVFD----DDRALFAADTLFSIGCGRVFEGTYPMMWESL-LKLRELPDDFKLYCGHEYTASNVKFALTIEPDNAALQARAKQVEQQRAAGQPTIPVTLGEEKQANLFLRADVPSVAAAVGLPGESAADVFGELRERKNN 254          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_METFK (Hydroxyacylglutathione hydrolase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gloB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.772e-25
Identity = 67/172 (38.95%), Postives = 94/172 (54.65%), Query Frame = 3
Query:   78 HQVENGDKFSI-GAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPEL--QELVGFNDPIEALREIRKRKDNW 584
            H V  GD+  I G  +++  L  P HT G ++YY  G       +F+GDTLF AGCG+ FEG+  QMY SL   L  LP  T+VYCGHEYT +NL FAL++E  +                GLP++PS++  EL TNPF+R   P +         DP+     IR+ ++++
Sbjct:   86 HPVTAGDRLDIPGIALSLSVLDVPGHTVGHVAYYGDGM------LFSGDTLFGAGCGRLFEGTPGQMYSSL-QQLAQLPVNTRVYCGHEYTERNLAFALSLEPHHEALLSRREATAALRAQGLPSLPSSMALELATNPFLRCHEPGIIAASKSAATDPVSVFAAIREMRNHF 250          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_XANOM (Hydroxyacylglutathione hydrolase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=gloB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 64/197 (32.49%), Postives = 105/197 (53.30%), Query Frame = 3
Query:   12 MKEMVPGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELV------GFNDPIEALREIRKRKDNW 584
            +++  PG++++    + +    H V +G++ S+ A V+   +  P HT+  I++        D  +F+GDTLF  GCG+ FEG+A QM+ SL   L  LP  T V CGHEYT+ N  FAL V++ N                  PT+P +++ EL TNPF+R + PE++ +V        +  ++   E+R+ KD +
Sbjct:   65 LQQRWPGLELFSPADERIPTTAHHVSHGERLSLLA-VDFQVIEVPGHTRTHIAFVT------DRHLFSGDTLFSLGCGRMFEGTAPQMFDSL-QRLACLPGETLVCCGHEYTLANAAFALHVDSTNAALQRRQQEAQAMRHAARPTLPISLKSELATNPFLRTNRPEIRAVVAARAAGALSSEVDVFAELRRWKDEF 253          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_VIBVU (Hydroxyacylglutathione hydrolase OS=Vibrio vulnificus GN=gloB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 69/190 (36.32%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGF----NDPIEALREIRKRKDNW 584
            P + V G   + +   TH VE+GD+  +      L L    HT G I Y   GK      +F GD LF AGCG+ FEG+A+QM+ SL   L +LP+ T+V+C HEYT  N+ FAL VE  N                 LPTIP+T+ +E   NPF+R   P +   V      +DP+     +R+ K+ +
Sbjct:   71 PNVNVVGPKAEPIPTLTHPVEDGDRLELFDET-FLVLGLGGHTLGHIGYVGDGK------LFCGDVLFSAGCGRIFEGTAQQMFDSLNKLL-ALPEETEVFCAHEYTASNVAFALAVEPDNELLHQYRDTVNRLRAQNLPTIPTTLRQEKWINPFLRYLQPSVIHSVSSRTKNSDPLSVFTALREWKNEF 252          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_RALEJ (Hydroxyacylglutathione hydrolase OS=Ralstonia eutropha (strain JMP134) GN=gloB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 74/189 (39.15%), Postives = 92/189 (48.68%), Query Frame = 3
Query:   39 VYGGPLDNVKGCTHQVENGDKFSIGAH-VNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELV-----GFNDPIEALREIRKRKDNWR 587
            V G   + + G T  V  GD  ++ A  +    L  P HT G ++Y      G  P VF GDTLF  GCG+ FEG+  QM  SL   L SLP  T+VYC HEYT  N+ FA  VE GN                G PT+PSTI  E + NPF+R   P ++E V           EA   +R  KDN+R
Sbjct:   80 VIGPAGERIGGRTQAVREGDTVTLPAPALQFRVLDVPGHTAGHVAY-AGDLPGVGPVVFCGDTLFATGCGRLFEGTPAQMLASLD-KLASLPGETRVYCAHEYTRSNVRFARAVEPGNTALADWEARVESLREAGQPTVPSTIGLERQVNPFLRSREPTVREAVKAQGGSVAGDAEAFGALRGWKDNFR 266          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO22_VIBVY (Hydroxyacylglutathione hydrolase 2 OS=Vibrio vulnificus (strain YJ016) GN=gloB2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 69/190 (36.32%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGF----NDPIEALREIRKRKDNW 584
            P + V G   + +   TH VE+GD+  +      L L    HT G I Y   GK      +F GD LF AGCG+ FEG+A+QM+ SL   L +LP+ T+V+C HEYT  N+ FAL VE  N                 LPTIP+T+ +E   NPF+R   P +   V      +DP+     +R+ K+ +
Sbjct:   71 PNVNVVGPKAEPIPTLTHPVEDGDRLELFDET-FLVLGLGGHTLGHIGYVGDGK------LFCGDVLFSAGCGRIFEGTAQQMFDSLNKLL-ALPEETEVFCAHEYTASNVAFALAVEPDNELLHQYRDTVNRLRAQNLPTIPTTLRQEKWINPFLRYLQPSVIHSVSSRTKNSDPLSVFTALREWKNEF 252          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_SILPO (Hydroxyacylglutathione hydrolase OS=Silicibacter pomeroyi GN=gloB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24
Identity = 71/171 (41.52%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   84 VENGDKFSIG-AHVNVLSLHTPCHTKGRISYYV-TGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFN--DPIEALREIRKRKDNW 584
            V  GD+F +G A V VL +    HT G I++++ TGK     AVFT D+L   GCG+ FEG+ +QM+ SL   L +LP  T V  GHEYT  N  FAL+V+  N                G PT+PS +  E  TNPF+R   P +Q L+G    DP     EIR RKD++
Sbjct:   93 VSEGDRFDLGGAPVEVLDVSG--HTVGHIAFHLPTGK-----AVFTADSLMALGCGRLFEGTPDQMWASLS-KLAALPDDTLVCSGHEYTQSNARFALSVDPDNAALKTRAAEIDQARAEGRPTVPSLLSLEKSTNPFLRAADPGIQSLLGMQGADPARVFAEIRARKDHF 255          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_VIBPA (Hydroxyacylglutathione hydrolase OS=Vibrio parahaemolyticus GN=gloB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.261e-24
Identity = 66/190 (34.74%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVG----FNDPIEALREIRKRKDNW 584
            P + V G   + +   T  +E GDK  +   +  L L  P HT G I Y        D  +F GD LF AGCG+ FEG+ EQM++SL   + +LP+ TQV+C HEYT  N+ FAL VE  N                 +PT+P+T+ +E   NPF+R   P++ + V      +DP      +R+ K+ +
Sbjct:   71 PHVTVVGPKAEPIPTLTTPMEEGDKLELFGEI-FLVLGLPGHTLGHIGYV------GDSKLFCGDVLFSAGCGRIFEGTPEQMFESLS-KIAALPEETQVFCAHEYTASNVAFALAVEPDNEQLRQYRDDVNRLRALNIPTLPTTLRKEKWINPFLRTTNPDVVKSVANRIKNSDPCSVFTALREWKNEF 252          
The following BLAST results are available for this feature:
BLAST of CF834778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GLO2_BART14.557e-2540.24Hydroxyacylglutathione hydrolase OS=Bartonella tri... [more]
GLO2_XANC55.951e-2533.33Hydroxyacylglutathione hydrolase OS=Xanthomonas ca... [more]
GLO2_RHOPS7.772e-2539.05Hydroxyacylglutathione hydrolase OS=Rhodopseudomon... [more]
GLO2_METFK7.772e-2538.95Hydroxyacylglutathione hydrolase OS=Methylobacillu... [more]
GLO2_XANOM1.326e-2432.49Hydroxyacylglutathione hydrolase OS=Xanthomonas or... [more]
GLO2_VIBVU1.326e-2436.32Hydroxyacylglutathione hydrolase OS=Vibrio vulnifi... [more]
GLO2_RALEJ1.326e-2439.15Hydroxyacylglutathione hydrolase OS=Ralstonia eutr... [more]
GLO22_VIBVY1.326e-2436.32Hydroxyacylglutathione hydrolase 2 OS=Vibrio vulni... [more]
GLO2_SILPO1.732e-2441.52Hydroxyacylglutathione hydrolase OS=Silicibacter p... [more]
GLO2_VIBPA2.261e-2434.74Hydroxyacylglutathione hydrolase OS=Vibrio parahae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06B17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834778 ID=CF834778; Name=CF834778; organism=Citrus sinensis; type=EST; length=607bp
GGGAACGAACGATGAAGGAGATGGTGCCTGGGATTAAGGTGTATGGTGGC
CCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAAAATGGTGATAA
GTTCTCAATTGGAGCTCATGTCAATGTACTGTCTCTTCACACACCTTGCC
ATACCAAAGGTCGCATAAGTTATTATGTGACTGGAAAAGAGGGAGAAGAC
CCAGCTGTTTTCACTGGAGACACACTGTTTGTTGCTGGTTGTGGAAAATT
TTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTGCGTGACATTGG
GCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATGAGTACACAGTG
AAGAACCTACTATTTGCTCTTACTGTCGAAGCAGGCAATGTGAAGCTACA
GCAAAAATTGGCGTGGGCTCAGAACCAGCAGCAAGCTGGCTTGCCAACCA
TTCCCTCAACCATTGAGGAAGAGTTGGAGACGAACCCCTTCATGCGTGTT
GATCTACCAGAGCTTCAGGAGTTGGTTGGTTTCAATGATCCCATTGAAGC
TCTCCGGGAGATAAGGAAGCGAAAGGACAATTGGAGAGGCTGATTAAGGA
CCTGCAT
back to top