CF834781

Overview
NameCF834781
Unique NameCF834781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.135e-41
Identity = 90/122 (73.77%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   29 KPKAEKRLPASKGEKGGEGKKERGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.135e-41
Identity = 90/122 (73.77%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   29 KPKAEKRLPASKGEKGGEGKKERGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 7.135e-41
Identity = 89/120 (74.17%), Postives = 96/120 (80.00%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS----IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                    +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   32 KPKAEKRLPAGKSKEGGEGKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 151
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B2_MAIZE (Histone H2B.2 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.217e-40
Identity = 89/122 (72.95%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K++P                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   29 KPKAEKRVPAGKSAGKEGGEGKRGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSJ (Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.589e-40
Identity = 89/123 (72.36%), Postives = 96/123 (78.05%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS-------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                       +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   30 KPKAEKRLPAGKGEKGGAGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSI (Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.589e-40
Identity = 89/123 (72.36%), Postives = 96/123 (78.05%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS-------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                       +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   30 KPKAEKRLPAGKGEKGGAGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.589e-40
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   32 KPKAEKRLPAGKSAGKEGGEGKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSJ (Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.076e-40
Identity = 89/124 (71.77%), Postives = 97/124 (78.23%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS--------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP               +        +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKGEKGSGEGKKDRAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSI (Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.076e-40
Identity = 89/124 (71.77%), Postives = 97/124 (78.23%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS--------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP               +        +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKGEKGSGEGKKDRAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSJ (Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
The following BLAST results are available for this feature:
BLAST of CF834781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_ORYSJ7.135e-4173.77Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI7.135e-4173.77Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_MAIZE7.135e-4174.17Histone H2B.1 OS=Zea mays PE=2 SV=3[more]
H2B2_MAIZE1.217e-4072.95Histone H2B.2 OS=Zea mays PE=2 SV=3[more]
H2B9_ORYSJ1.589e-4072.36Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B9_ORYSI1.589e-4072.36Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_MAIZE1.589e-4072.13Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B5_ORYSJ2.076e-4071.77Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B5_ORYSI2.076e-4071.77Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B7_ORYSJ3.541e-4072.13Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834781 ID=CF834781; Name=CF834781; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTCTAAATCATATTTCATTTTCATATTCCCCCTTAAAGAA
CATGCACATCACCTGGGATCAGGTCCAAATTCCTTGTACATCCAAACAAA
CCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGACTTC
ATCTAGCAAAATTAAAGGCCTAAACTACTAACTACACAAATCACGTGGCA
CCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACT
TAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCA
GGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGG
CTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGA
AAATATCGTTGAGGAGGCTGTTCATGATTCCCATGGCCTTGCTCGAGATT
CCGATATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTA
CGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTCTTGCCGCCAGAGGCGG
CTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCT
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