CF834796

Overview
NameCF834796
Unique NameCF834796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.824e-55
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+++RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  263 ITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 397
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.383e-55
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ SR+ TVSA HGDM+Q  R++IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFVT DD RML DI++FY+  I+E+P NVADL+
Sbjct:  277 ITQAVIFCNTRRKVDWLTDKLTSREFTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDVRMLRDIEQFYSTQIDEMPLNVADLI 411
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.112e-55
Identity = 105/135 (77.78%), Postives = 118/135 (87.41%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.064e-55
Identity = 105/135 (77.78%), Postives = 118/135 (87.41%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  262 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.064e-55
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q+ RDIIM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  262 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.308e-55
Identity = 105/135 (77.78%), Postives = 118/135 (87.41%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  263 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 397
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.308e-55
Identity = 105/135 (77.78%), Postives = 118/135 (87.41%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  262 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.308e-55
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q+ RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  287 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 421
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.308e-55
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q+ RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.932e-55
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HG+M+QN RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398
The following BLAST results are available for this feature:
BLAST of CF834796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_CHAGB1.824e-5577.78ATP-dependent RNA helicase eIF4A OS=Chaetomium glo... [more]
IF4A_USTMA2.383e-5578.52ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A_BOTFB3.112e-5577.78ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
IF4A_PHANO4.064e-5577.78ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A_ASPTN4.064e-5577.78ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
IF4A_NEUCR5.308e-5577.78ATP-dependent RNA helicase eIF4A OS=Neurospora cra... [more]
IF4A_MAGGR5.308e-5577.78ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr... [more]
IF4A_ASPOR5.308e-5577.04ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
IF4A_ASPCL5.308e-5577.04ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
IF4A_COCIM6.932e-5577.04ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06C03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834796 ID=CF834796; Name=CF834796; organism=Citrus sinensis; type=EST; length=684bp
AATTGATACGAAAGGACATAAAATACAAAGACCTCCCTTTAACAAAAATT
TCAATAATTATAAACCCACCACAGTGCCTCTTGCAAATGTGCATGACCCA
TATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATTTAAGACACT
ATACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGGAGAAAAGAA
CCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTTCTTGCCTCG
ACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCAACGTTTGAA
GGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATCAAAAAGCAT
TCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCTTTCTTCCAA
ATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGTTGAGTCGGC
AGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAATACCACGAGC
CAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGCGAAATTCAC
GCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGAGTGGCAGAG
ACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTCGACCTTTCG
CCGAGTGTTCACAAAGATGACACTCTGGGTTATG
back to top