CF834798

Overview
NameCF834798
Unique NameCF834798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:997..1690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 102/150 (68.00%), Postives = 126/150 (84.00%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+GRKGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 102/150 (68.00%), Postives = 126/150 (84.00%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+GRKGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  265 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 414          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 103/145 (71.03%), Postives = 123/145 (84.83%), Query Frame = -2
Query:  303 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSN 737
            EWK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+ +Y+  I+E+P N
Sbjct:  249 EWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMN 393          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.036e-54
Identity = 101/150 (67.33%), Postives = 125/150 (83.33%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+G KGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  266 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 415          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.308e-54
Identity = 101/150 (67.33%), Postives = 121/150 (80.67%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWK +TLCDLY+TL ITQ+VIF NT++KVDWLT +M+  + TV + HGDM Q  RD IM EFRSG SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF T DD   L DI+++Y+  I+E+P NV D++
Sbjct:  248 EWKFDTLCDLYDTLTITQAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATNDDITTLRDIEQYYSTQIDEMPVNVTDMM 397          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.014e-54
Identity = 101/150 (67.33%), Postives = 121/150 (80.67%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWK +TLCDLY+TL ITQ+VIF NTRRKVDWL+ KM+  +  VS+ HG+M Q  RD +M EFR GSSRVLITTD+ ARGID+  +SLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R L DI++FY+  I+E+P  + D+L
Sbjct:  248 EWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDML 397          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.552e-53
Identity = 101/124 (81.45%), Postives = 110/124 (88.71%), Query Frame = -2
Query:  366 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 737
            EWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD
Sbjct:  249 EWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADD 372          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.552e-53
Identity = 99/150 (66.00%), Postives = 125/150 (83.33%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            +WK +TLCDLY++L ITQ+VIF NT+ KV+WLTD+M+  + TV A HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN VT++D   L DI++FY + I+E+P NV D++
Sbjct:  250 DWKFDTLCDLYDSLTITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKEDVDELRDIERFYRIRIKEMPVNVNDIM 399          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.353e-53
Identity = 97/149 (65.10%), Postives = 125/149 (83.89%), Query Frame = -2
Query:  288 WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 734
            +K E LCDLYET+ ++Q+VIF NTRRKVD+LT  +   D TVS+ HG+ +Q+ RD+IM+ FR+GSSR+LITTDLLARGIDVQQVSLVIN+DLP+  ENY+HRIGR GRFGRKGVAINFVT +D  ML ++++FY+  I E+P+N+ADL+
Sbjct:  247 YKFEVLCDLYETINVSQAVIFCNTRRKVDYLTQALTEADFTVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYIHRIGRGGRFGRKGVAINFVTSEDHGMLKELERFYSTEIVEMPTNIADLI 395          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.353e-53
Identity = 96/150 (64.00%), Postives = 123/150 (82.00%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            +WK +TLCDLY+ L ITQ+VIF NT+ KV+WLTD+MR ++ TV + HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN +T++D   L D +K+Y+  I E+P N+ D++
Sbjct:  250 DWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIREMPMNINDIM 399          
The following BLAST results are available for this feature:
BLAST of CF834798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_BOVIN1.598e-5568.00Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
I4A3B_XENLA1.598e-5568.00Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
FAL1_AJECN1.598e-5571.03ATP-dependent RNA helicase FAL1 OS=Ajellomyces cap... [more]
I4A3A_XENLA1.036e-5467.33Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
FAL1_YARLI2.308e-5467.33ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
FAL1_USTMA3.014e-5467.33ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A_AJECN2.552e-5381.45ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
FAL1_DEBHA2.552e-5366.00ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
IF4A_YARLI4.353e-5365.10ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
FAL1_PICST4.353e-5364.00ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834798 ID=CF834798; Name=CF834798; organism=Citrus sinensis; type=EST; length=738bp
TAGAAATAAATTGATAACAAAAGGACATAAAATACAAAGACCCCCCTTTA
ACAAAAATTTCAATAATTATAAACCCACCACAGTGCAGCTTGCAAATGTG
CATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATT
TAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGG
AGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTT
CTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCA
ACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATC
AAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCT
TTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGT
TGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAAT
ACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGC
GAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGA
GTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTC
GACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTATGGCCAGAG
TCTCATAAAGATCACAGAGGGTTTCAAGCTTCCATTCT
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