CF834827

Overview
NameCF834827
Unique NameCF834827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_DROME (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Drosophila melanogaster GN=ND75 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 7.337e-55
Identity = 100/141 (70.92%), Postives = 119/141 (84.40%), Query Frame = 2
Query:  203 DAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEM----KRSVVDKNLG 613
            + IEVFVD  P+++  G TVLQA    GV+IPRFCYH RL++AGNCRMCLVEVEKSPKPVA+CAMP + G +IKT++ L +KAREGVMEFLLMNHPLDCPICDQGGECDLQDQ+MAFGSDR RFT++    KR+V DK++G
Sbjct:   40 EKIEVFVDDIPVQVVPGTTVLQAAAQIGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGWRIKTNSDLTRKAREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTDINYTGKRAVEDKDIG 180          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_PONAB (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo abelii GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.641e-54
Identity = 100/152 (65.79%), Postives = 116/152 (76.32%), Query Frame = 2
Query:  158 RSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G  I T++  +KKAREGVME LL NHPLDCPICDQGGECDLQDQSM FG+DR RF E KR+V DKN+G
Sbjct:   15 KSPKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMELLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIG 166          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_BOVIN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.641e-54
Identity = 101/152 (66.45%), Postives = 115/152 (75.66%), Query Frame = 2
Query:  158 RSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +S  G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G  I T++   KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FGSDR RF E KR+V DKN+G
Sbjct:   15 KSSKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKTKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIG 166          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_NEUCR (NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-78 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.530e-52
Identity = 96/137 (70.07%), Postives = 111/137 (81.02%), Query Frame = 2
Query:  209 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEM--KRSVVDKNLG 613
            +E+ +DG  + I  G  ++QACE AGV IPR+CYH +L IAGNCRMCLVEVEK PKPVASCA P  PGM +KT++PL  KAREGVMEFLL NHPLDCPICDQGGECDLQDQSM +G DRGRF E+  KR+V DKN+G
Sbjct:   36 VELTIDGKKVSIEAGSALIQACEKAGVTIPRYCYHEKLMIAGNCRMCLVEVEKVPKPVASCAWPVQPGMVVKTNSPLTHKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMRYGGDRGRFHEVGGKRAVEDKNMG 172          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_RICFE (NADH-quinone oxidoreductase subunit G OS=Rickettsia felis GN=nuoG PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.432e-50
Identity = 91/135 (67.41%), Postives = 107/135 (79.26%), Query Frame = 2
Query:  209 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            I++ +DG  +++ +G TV QAC  AG +IP FCYH RL IAGNCRMCLVE+EKSPKP+ASCAMP   GM I TDTP+ KKAREGVMEFLL+NHPLDCPICDQGGECDLQDQ+  +G    RF E KRS+ DK +G
Sbjct:    2 IKLNIDGSEIEVSEGSTVYQACTQAGKEIPHFCYHERLKIAGNCRMCLVEMEKSPKPIASCAMPVSNGMVIHTDTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAFRYGKGTNRFHENKRSIKDKYMG 136          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_RICBR (NADH-quinone oxidoreductase subunit G OS=Rickettsia bellii (strain RML369-C) GN=nuoG PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.432e-50
Identity = 91/135 (67.41%), Postives = 107/135 (79.26%), Query Frame = 2
Query:  209 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            I++ +DG  +++ +G TV QAC  AG +IP FCYH RL IAGNCRMCLVE+EKSPKP+ASCAMP   GM I TDTP+ KKAREGVMEFLL+NHPLDCPICDQGGECDLQDQ+  +G    RF E KRS+ DK +G
Sbjct:    2 IKLTIDGQEIEVSEGTTVYQACTKAGKEIPHFCYHERLKIAGNCRMCLVEMEKSPKPIASCAMPVGNGMVIHTDTPMVKKAREGVMEFLLVNHPLDCPICDQGGECDLQDQAFRYGKGTNRFHENKRSIKDKYMG 136          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_RICPR (NADH-quinone oxidoreductase subunit G OS=Rickettsia prowazekii GN=nuoG PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.870e-50
Identity = 92/135 (68.15%), Postives = 107/135 (79.26%), Query Frame = 2
Query:  209 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            I++ +DG  ++I +G TV QAC  AG +IP FCYH+RL IAGNCRMCLVE+EKS KPVASCAMP   GM I TDTP+ KKAREGVMEFLL+NHPLDCPICDQGGECDLQDQ+  +G    RF E KRS+ DK +G
Sbjct:    2 IKLIIDGSEIEISEGSTVYQACIQAGKEIPHFCYHARLKIAGNCRMCLVEIEKSQKPVASCAMPVSKGMVIHTDTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAFRYGKGTNRFHENKRSIKDKYMG 136          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_RICCN (NADH-quinone oxidoreductase subunit G OS=Rickettsia conorii GN=nuoG PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.166e-50
Identity = 91/135 (67.41%), Postives = 107/135 (79.26%), Query Frame = 2
Query:  209 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            I++ VDG  +++ +G TV QAC  AG +IP FCYH RL IAGNCRMCLVE+EKSPKP+ASCAMP   GM I TDTP+ KKAREGVMEFLL+NHPLDCPICDQGGEC+LQDQ+  +G    RF E KRS+ DK +G
Sbjct:    2 IKLNVDGSEIEVSEGSTVYQACTQAGKEIPHFCYHQRLKIAGNCRMCLVEMEKSPKPIASCAMPVSNGMVIHTDTPMVKKAREGVMEFLLINHPLDCPICDQGGECNLQDQAFRYGKGTNRFHENKRSIKDKYMG 136          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_RICTY (NADH-quinone oxidoreductase subunit G OS=Rickettsia typhi GN=nuoG PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.527e-49
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 2
Query:  209 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            I++ +DG  ++I +G TV QAC  AG  IP FCYH+RL IAGNCRMCLVE+EKS KPVASCAMP   GM I TDT + KKAREGVMEFLL+NHPLDCPICDQGGECDLQDQ+  +G    RF E KRS+ DK +G
Sbjct:    2 IKLIIDGSEIEISEGSTVYQACIQAGKQIPHFCYHARLKIAGNCRMCLVEIEKSQKPVASCAMPVSNGMVIHTDTSMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAFRYGKGTNRFHENKRSIKDKYMG 136          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NQO3_PARDE (NADH-quinone oxidoreductase chain 3 OS=Paracoccus denitrificans GN=nqo3 PE=1 SV=4)

HSP 1 Score: 178.718 bits (452), Expect = 2.003e-44
Identity = 87/146 (59.59%), Postives = 109/146 (74.66%), Query Frame = 2
Query:  203 DAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSP-KPVASCAMPAL---PG-----MKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            D  ++ +D   +++    T++QACE+AG+++PRFCYH RLSIAGNCRMCLVEV   P KP ASCAM      PG      +I+T++P+ KKAREGVMEFLL+NHPLDCPICDQGGECDLQDQ+MA+G D  R+ E KR+  D NLG
Sbjct:    3 DLRKIKIDDTIIEVDPNMTLIQACEMAGIEVPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVKDLRPGPEGAPSEIRTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRYREPKRATEDLNLG 148          
The following BLAST results are available for this feature:
BLAST of CF834827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NDUS1_DROME7.337e-5570.92NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PONAB3.641e-5465.79NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_BOVIN3.641e-5466.45NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_NEUCR1.530e-5270.07NADH-ubiquinone oxidoreductase 78 kDa subunit, mit... [more]
NUOG_RICFE1.432e-5067.41NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]
NUOG_RICBR1.432e-5067.41NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]
NUOG_RICPR1.870e-5068.15NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]
NUOG_RICCN4.166e-5067.41NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]
NUOG_RICTY3.527e-4967.41NADH-quinone oxidoreductase subunit G OS=Rickettsi... [more]
NQO3_PARDE2.003e-4459.59NADH-quinone oxidoreductase chain 3 OS=Paracoccus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834827 ID=CF834827; Name=CF834827; organism=Citrus sinensis; type=EST; length=614bp
AATGGGGTTAGGGTTGTTAGCATCGAGGGCGATGAGACCCCATAAGAATT
CAAACTCCAGAGTNTTTATCCGGTCCATCGCCTTCAAACCGGAGCTCCAA
TCACCCGAAGCTTCTTCAGCAGCAGCGGCTACAGCGCTCGAACCGGATCT
CCCCCCTCGATCGCCCGTGGGTGGGGCCCGGGTCCATTTCCCCAACCCTG
AAGATGCAATCGAAGTGTTCGTCGATGGTTACCCGCTCAAAATCCCCAAG
GGCTTCACCGTTTTGCAGGCCTGTGAGGTCGCCGGCGTTGACATTCCTAG
ATTTTGTTATCACAGTAGACTTTCGATTGCCGGAAATTGCCGAATGTGTC
TCGTTGAAGTCGAGAAATCGCCCAAACCTGTTGCTTCTTGCGCCATGCCT
GCTCTTCCCGGAATGAAAATTAAGACGGATACACCGTTAGCTAAGAAGGC
GAGAGAAGGGGTGATGGAGTTTTTGTTAATGAATCATCCTTTGGATTGTC
CAATTTGTGATCAGGGTGGTGAATGTGATCTCCAGGATCAGTCTATGGCT
TTCGGTTCTGATCGTGGCCGCTTCACTGAAATGAAAAGATCTGTTGTTGA
TAAGAATCTTGGTC
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