CF834827

Overview
NameCF834827
Unique NameCF834827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_PSESM (NADH-quinone oxidoreductase subunit G OS=Pseudomonas syringae pv. tomato GN=nuoG PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.064e-21
Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 2
Query:  215 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV-----EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            + VDG  L++     +LQAC   G+DIP FC+H  L   G CR C V     E +   + V SC  PA     I  +   +K  R  V+E+L+ NHP DCP+C++GG C LQD ++  G +  R+   KR+  ++ LG
Sbjct:    4 IHVDGKALEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDTRGRIVMSCMTPATDNTWISIEDDESKAFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQELG 141          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_BUCAP (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nuoG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.664e-20
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 2
Query:  212 EVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV-----EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +++VDG    + +   +LQAC  +G++IP FC+H  L   G CR C V      ++   K + SC  P + G  I  +   +KK R  ++E LL NHP DCP+C++GG C LQD ++    +   +   KR+  ++ LG
Sbjct:    3 KIYVDGKAYCMSESDNLLQACLSSGLNIPYFCWHPILGSLGACRQCAVTQYNSSLDNQGKLIMSCMTPVIDGTIISINDDTSKKFRSNIVELLLTNHPHDCPVCEEGGNCHLQDMTVMTTHNFRNYRFSKRTHKNQYLG 141          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_BUCAI (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  212 EVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEV-----EKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +++VD     + +   +LQAC   G++IP FC+H  L   G CR C V       ++  + + SC  P   G  I   +  ++  R  ++E LL NHP DCP+C++GG C LQD ++        +   KR+  ++ LG
Sbjct:    3 KIYVDSKIYNVNESDNLLQACLSVGINIPYFCWHPLLGSLGACRQCAVTQYDNFQDRKGRLIMSCMTPVTDGAIISIKSTESEVFRSAIVELLLTNHPHDCPVCEEGGHCHLQDMTVMVKHSMRNYRFKKRTHKNQYLG 141          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_BLOFL (NADH-quinone oxidoreductase subunit G OS=Blochmannia floridanus GN=nuoG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 42/147 (28.57%), Postives = 73/147 (49.66%), Query Frame = 2
Query:  209 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS------------PKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            I ++++     +     VL+ C   G ++P FC+H  L   G+CR C V++  +             + V SC  P +  M I       ++ R+ ++E L++NHP DCP+C++GG C LQD ++       R+   KR+  ++ LG
Sbjct:    3 IPIYIEEKKYMVEDTKNVLEVCLSLGFNVPYFCWHPALGSIGSCRQCAVKLYDNLHCVPDSKHINFGRLVMSCMTPVIKDMYISLFDKELQEFRKNILELLMVNHPHDCPVCEEGGNCHLQDMAVMVEHTYRRYRFTKRTHYNQYLG 149          
The following BLAST results are available for this feature:
BLAST of CF834827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NUOG_PSESM4.064e-2137.68NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]
NUOG_BUCAP7.664e-2034.53NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_BUCAI2.087e-1731.65NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_BLOFL8.768e-1628.57NADH-quinone oxidoreductase subunit G OS=Blochmann... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834827 ID=CF834827; Name=CF834827; organism=Citrus sinensis; type=EST; length=614bp
AATGGGGTTAGGGTTGTTAGCATCGAGGGCGATGAGACCCCATAAGAATT
CAAACTCCAGAGTNTTTATCCGGTCCATCGCCTTCAAACCGGAGCTCCAA
TCACCCGAAGCTTCTTCAGCAGCAGCGGCTACAGCGCTCGAACCGGATCT
CCCCCCTCGATCGCCCGTGGGTGGGGCCCGGGTCCATTTCCCCAACCCTG
AAGATGCAATCGAAGTGTTCGTCGATGGTTACCCGCTCAAAATCCCCAAG
GGCTTCACCGTTTTGCAGGCCTGTGAGGTCGCCGGCGTTGACATTCCTAG
ATTTTGTTATCACAGTAGACTTTCGATTGCCGGAAATTGCCGAATGTGTC
TCGTTGAAGTCGAGAAATCGCCCAAACCTGTTGCTTCTTGCGCCATGCCT
GCTCTTCCCGGAATGAAAATTAAGACGGATACACCGTTAGCTAAGAAGGC
GAGAGAAGGGGTGATGGAGTTTTTGTTAATGAATCATCCTTTGGATTGTC
CAATTTGTGATCAGGGTGGTGAATGTGATCTCCAGGATCAGTCTATGGCT
TTCGGTTCTGATCGTGGCCGCTTCACTGAAATGAAAAGATCTGTTGTTGA
TAAGAATCTTGGTC
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