CF834833

Overview
NameCF834833
Unique NameCF834833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11237 contig Csv1_Contig11237:309..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = -2
Query:  194 LDLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 520
            +DL  + +SGT    + Q+  L+ L +  N +SG  P +LG + +L  + M  N   G++P +  NL+SLK L +++N +TG IP  L+ L +L  F +  N L G IP
Sbjct:  117 IDLVLNFLSGTIPTTLSQIP-LEILAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIP 224          

HSP 2 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 53/159 (33.33%), Postives = 77/159 (48.43%), Query Frame = -2
Query:  131 RLDLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLR------------------------LNNNKLTGSIPREL-TTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESF---ENNKLNGP 523
            RL + ++NI+G     +  L++L    +  N +SGKIP  +GN   LV +D+    +EG IP S +NLK+L  LR                        L N  +   IP  + T+++ LK+ D+S+N L GTIP    FRS    +F    NN L GP
Sbjct:  187 RLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLTELRITDLRGPTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNGTIP--DTFRSLNAFNFMYLNNNSLTGP 343          

HSP 3 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = -2
Query:  194 LDLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 520
            L +  + +SG + P++GQ+  L  + +  N  +G++P  LGNL+SL  + +  N + G IP+S +NLK+L   R++ N L+G IP  +   + L   D+    + G IP
Sbjct:  140 LAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIP 248          
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  131 LDLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPME--SFENNKLNGP 520
            +D  N+ I G+    +     LQ+  L  N  +G IP+ LG L  L  M +  N L GE+P  F NL  L  L +++N ++G++P  +  L  L    V NN L GT+ V    +  P++  + ENN  +GP
Sbjct:  103 IDFSNNRIGGSIPSTLPVT--LQHFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDV---LQGLPLQDLNIENNLFSGP 229          
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  194 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 448
            L+L  + ++GKI  ++ NL  L  +D+  NKL G +P+  AN+KSL F+ L+NN L GSIP+ L    +LK+    N  LC T P
Sbjct:  419 LDLSSHKLTGKIVPDIQNLTQLQKLDLSNNKLTGGVPEFLANMKSLLFINLSNNNLVGSIPQALLDRKNLKLEFEGNPKLCATGP 503          
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = -2
Query:  194 HVPCDSNNHVIRLDLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFD--VSNNGLCGTIP 556
            ++P     ++  LD   + + G     + Q+++LQ + L  N ++G++P     L  L ++D   NKL G++P+SFANL SLK L L +N+ TG    ++  L +L + D  V +N   G IP
Sbjct:  107 NIPYQLPPNIANLDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRFTG----DINVLRNLAIDDLNVEDNQFEGWIP 225          
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: PII2_ARATH (Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = -2
Query:  197 VIRLDLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKS--------------------------LVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIP-RELTTLSDLKVFDVSNNGLCGTI 529
            +++LDL N+ + G    E+G L++L  L+L  N  SG + K + N++S                          LV +D+ +  L GEIP S  NLK L+FL LNNN LTG +P ++L  L  L    ++ N L G +
Sbjct:  241 LLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVVLDLSKMGLRGEIPTSLTNLKRLRFLGLNNNNLTGFVPSKKLEALPCLGALYINGNNLTGEL 378          

HSP 2 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 44/135 (32.59%), Postives = 63/135 (46.67%), Query Frame = -2
Query:  194 LDLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNK--------------------------LTGSIPRELTTLSDLKVFDVSNNGLCGTIP 520
            LDL  ++ SGT     G L  L  L+L  N + G +P+ELG LK+L  +D+  N+  G + K+  N++SL  L L+NN                           L G IP  LT L  L+   ++NN L G +P
Sbjct:  220 LDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVVLDLSKMGLRGEIPTSLTNLKRLRFLGLNNNNLTGFVP 354          
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: Y2278_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = -2
Query:  170 LDLGNSNISGTWGPEVGQL-QHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSF 520
            LDLG + +    GPEV  L   L  + L  N    KIP+++  L +L S+D+  N+  G IP+   ++ SL+ L L+ N L+GS+P    T S +   DVS+N L G +P     +SF
Sbjct:  184 LDLGGNKL----GPEVPSLPSKLTTVSLKNNSFRSKIPEQIKKLNNLQSLDLSSNEFTGSIPEFLFSIPSLQILSLDQNLLSGSLPNSSCTSSKIITLDVSHNLLTGKLPSCYSSKSF 297          
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = -2
Query:  131 VPCDSN-NHVIRLDLGNSNISGTWGPE-VGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENN-KLNGP 553
            V C+ + + +I + L    ++G   P  + +L  L+ L L  N ISG+ PK+   LK L  + +  N L G +P  F+  K+L  + L+NN   G+IP  L+ L  ++  +++NN L G IP      S       NN  L GP
Sbjct:   61 VTCNQDGSRIIAVRLPGVGLNGQIPPNTISRLSALRVLSLRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKNLTSVNLSNNGFNGTIPSSLSRLKRIQSLNLANNTLSGDIPDLSVLSSLQHIDLSNNYDLAGP 204          
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = -2
Query:  134 DLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP---------VDGPFRSFPMESFENNKLNG 517
            D+ N N S  +   +  ++ L  L L  N+++G IP  +G   SL  +D+  NKL G IP S  NL+ L  L L NN L GS+P +      L   DVS N L G++P         ++    +F +E  +N  L+G
Sbjct:  275 DISNGNSSLEF---IKDMKSLSILVLRNNNLTGTIPSNIGEYSSLRQLDLSFNKLHGTIPASLFNLRQLTHLFLGNNTLNGSLPTQKG--QSLSNVDVSYNDLSGSLPSWVSLPNLNLNLVANNFTLEGLDNRVLSG 406          

HSP 2 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 28/85 (32.94%), Postives = 55/85 (64.71%), Query Frame = -2
Query:  194 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 448
            +++Y  ++ G IP++L  L+ L ++++ QN L G +P +  NL  ++++    N L+G IP+E+  L+DL++  +S+N   G+IP
Sbjct:  103 IKVYAMEVVGSIPQQLWTLEYLTNLNLGQNVLTGSLPPALGNLTRMRWMTFGINALSGPIPKEIGLLTDLRLLSISSNNFSGSIP 187          
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: Y2242_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = -2
Query:  134 LDLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFP---MESFENNKLNG 520
            LDL N+ IS     +   L  L+ L L  N ISG     +GN   L  +D+  N   G IP++  +L SL+ L+L++N    SIPR L     L   D+S+N L G++P DG   +FP     S   NK++G
Sbjct:   97 LDLSNNKISAL-PSDFWSLNTLKNLNLSFNKISGSFSSNVGNFGQLELLDISYNNFSGAIPEAVDSLVSLRVLKLDHNGFQMSIPRGLLGCQSLVSIDLSSNQLEGSLP-DGFGSAFPKLETLSLAGNKIHG 226          
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = -2
Query:  134 SNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLS-DLKVFDVSNNGLCGTIPVDGPFRSFP--MESFENNKLNG 505
            SN++G   P + +L+HL+ + L   ++SG +P     LK+L  +D+  N L G IP S + L +L  L L+ N LTG IP      +       +S+N L G IP    FR F   +     NKL G
Sbjct:  108 SNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLDRNHLTGPIPDSFGKFAGSTPGLHLSHNQLSGKIPYS--FRGFDPNVMDLSRNKLEG 232          
The following BLAST results are available for this feature:
BLAST of CF834833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
Y5344_ARATH4.899e-1235.78Probable LRR receptor-like serine/threonine-protei... [more]
SRF3_ARATH8.357e-1233.33Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
Y5169_ARATH1.091e-1142.35Probable LRR receptor-like serine/threonine-protei... [more]
SRF5_ARATH1.091e-1132.52Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
PII2_ARATH1.091e-1133.33Piriformospora indica-insensitive protein 2 OS=Ara... [more]
Y2278_ARATH1.425e-1136.44Probable LRR receptor-like serine/threonine-protei... [more]
Y4374_ARATH3.175e-1131.94Probable inactive receptor kinase At4g23740 OS=Ara... [more]
Y5614_ARATH4.147e-1133.58Probable LRR receptor-like serine/threonine-protei... [more]
Y2242_ARATH4.147e-1136.36Probable LRR receptor-like serine/threonine-protei... [more]
PGIP_VITVI7.074e-1134.65Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834833 ID=CF834833; Name=CF834833; organism=Citrus sinensis; type=EST; length=560bp
TCGATAAGCTGATGCACACAATATAATTTTACCCTATACGAGTCTTTAAC
ATTATGGTCCTCAATAGAAGACGGAGGGTTTTCAACCTTCTTCAGCATCC
AAAATCATAAGGCACCAGTCCTTGCAGCTCTGGTCCATTGAGTTTATTAT
TTTCAAAACTCTCCATAGGAAAGCTTCTAAAAGGACCATCAACAGGGATT
GTCCCACAGAGACCATTGTTAGAAACATCAAAAACTTTGAGGTCCGACAG
GGTGGTCAGCTCCCTCGGAATTGATCCTGTTAGTTTGTTGTTGTTCAACC
GCAGAAATTTAAGTGACTTCAAATTGGCAAAGGACTTTGGTATTTCTCCT
TCCAGTTTATTCTGATACATATCCATGCTGACAAGGCTTTTCAAATTACC
TAACTCTTTCGGAATTTTCCCACTTATGTCATTCATGTAAAGCTCCAAGT
ACTGCAGATGCTGGAGCTGGCCAACCTCAGGCCCCCAAGTTCCAGAAATA
TTAGAGTTACCCAAGTCCAAACGAATCACATGATTGTTGGAATCACAGGG
GACATGGAAC
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