CF834839

Overview
NameCF834839
Unique NameCF834839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2636 contig Csv1_Contig2636:167..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGLR KRE+W  + AL + R AAR+++ L     +  R   + + L+  + R G L E+ + +D VLAL VE  L+RRLQT V++ G A+S   AR  I   HI +G + V IP + V    Q+ I ++ +SP
Sbjct:   33 YGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  369 YGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 737
            YGLR K+ELW  +  L  I   AR LL++  +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   35 YGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = -2
Query:  393 YGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 737
            YGLR KRELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR LI   HI +  + V  P F+V
Sbjct:   35 YGLRNKRELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = -2
Query:  309 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRR---IFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 737
            YGLR KRE+WR Q  L R R AAR+LL    ++        + E LL  ++R G L    +  D VL+L ++  LERRLQT+V++ G+A+S   AR ++   HI +  + V+IPS+ V  D +  I +  TSP        ++R N
Sbjct:   33 YGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARSPKQARQMVTHGHIAIAGRRVDIPSYRVPRDQETLISYYGTSPLTSEGHPEIERIN 177          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  351 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 737
            YGLR K+ELW  +  L  I++ AR++L+     P  I  GEA  R   R+ R G + +    LD VLAL V   LERRLQTLV++ GMA+SIH AR LI   HI +    V  P ++V  + +  I F+ TS
Sbjct:   35 YGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 49/130 (37.69%), Postives = 73/130 (56.15%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+VF+ G+AK+   AR  I   HI V  + V  P++++ V     IE+   SP
Sbjct:   33 YGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSP 160          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 49/130 (37.69%), Postives = 73/130 (56.15%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:   33 YGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = -2
Query:  360 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 737
            +GLR KRELW+    LSR+R+ AR LL L ++   R  +   L++ + R G L  S   LD VL LT  + L RRLQT+V K    K+ + AR  +   HI +G + V+IPS+ V V+ +  I F+
Sbjct:   33 FGLRTKRELWKAHTELSRVRHQARSLLALRQEV--RAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 48/130 (36.92%), Postives = 72/130 (55.38%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGL  K+E+W+++  L   R  AR L++       +  E   L   ++RYG L +    LD VL+L +E+ LERRLQTLVF+ G+A +   AR  I   HI V  + +N PS++V +  +  I +   SP
Sbjct:   33 YGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 49/130 (37.69%), Postives = 77/130 (59.23%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGL+ K+E+W+ +  + R R  AR LL +  ++  +  E E LL  + R G L E   KL+ VL LTVE+ L RRLQTLV K G+A+++  AR ++   HI +  + ++ P ++V+   +  I F  +SP
Sbjct:   33 YGLKNKKEVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159          
The following BLAST results are available for this feature:
BLAST of CF834839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_METHJ1.910e-1639.1030S ribosomal protein S4P OS=Methanospirillum hung... [more]
RS4_PYRIL2.495e-1639.2030S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]
RS4_PYRAR2.495e-1642.7430S ribosomal protein S4P OS=Pyrobaculum arsenatic... [more]
RS4_METPE3.258e-1637.6730S ribosomal protein S4P OS=Methanosphaerula palu... [more]
RS4_CALMQ3.258e-1643.1830S ribosomal protein S4P OS=Caldivirga maquilinge... [more]
RS4_METMP4.255e-1637.6930S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METM65.558e-1637.6930S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_NITMS2.758e-1540.4830S ribosomal protein S4P OS=Nitrosopumilus mariti... [more]
RS4_META32.758e-1536.9230S ribosomal protein S4P OS=Methanococcus aeolicu... [more]
RS4_METTH3.602e-1537.6930S ribosomal protein S4P OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834839 ID=CF834839; Name=CF834839; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTTTTTTTTTACCGGAGATTTAATTTAGGCATAAAAAAGCCTAT
GGATCAAAGAGTACATCCCAAAAAACAAAAACAATTCCCTCAATGAGTAG
TCTGTAAAGCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAG
CAAAAACATAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCA
GAGTTCCTACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTT
ATTCTTCATCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCA
GCCTTAATGTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGG
ACTTGTGAGTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAA
ATGAGGGAATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTG
ATGAGCACTCGAGCATGGTGAATTGACTTAGCCATGCCACTCTTGAACAC
AAGGGTCTGAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACA
CATAATCAAGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATC
CTCCTGAGAAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATC
GAGAGTGAGAAGATCCCTCGCAGCATTTCGGATGCGGCTCAGTGCGTATT
GAACCCTCCAGAGTTCCCTCTTGCAGCGAAGCCCATAC
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