CF834840

Overview
NameCF834840
Unique NameCF834840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2636 contig Csv1_Contig2636:7..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9A_SCHPO (40S ribosomal protein S9-A OS=Schizosaccharomyces pombe GN=rps9a PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.031e-66
Identity = 120/172 (69.77%), Postives = 149/172 (86.63%), Query Frame = 3
Query:   78 RNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 593
            R   KT+K PRRP+E ARLDAEL+L GEYGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R G L+E++ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:    6 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.945e-65
Identity = 117/169 (69.23%), Postives = 147/169 (86.98%), Query Frame = 3
Query:   81 NYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 587
            NY KT   PRRP+EK R+DAEL++VGE+GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+PSF+VRV+SQKH+  + TSP  GGRPGR  R+
Sbjct:    4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARK 172          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9B_YEAST (40S ribosomal protein S9-B OS=Saccharomyces cerevisiae GN=RPS9B PE=1 SV=4)

HSP 1 Score: 246.514 bits (628), Expect = 9.651e-65
Identity = 117/171 (68.42%), Postives = 145/171 (84.80%), Query Frame = 3
Query:   78 RNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 590
            R Y KT+  P+RPYE +RLDAEL+L GE+GL+ KRE++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:    6 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9A_YEAST (40S ribosomal protein S9-A OS=Saccharomyces cerevisiae GN=RPS9A PE=1 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 2.150e-64
Identity = 116/171 (67.84%), Postives = 145/171 (84.80%), Query Frame = 3
Query:   78 RNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 590
            R Y KT+  P+RPYE +RLDAEL+L GE+GL+ K+E++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:    6 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9_CAEEL (40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.820e-63
Identity = 113/168 (67.26%), Postives = 146/168 (86.90%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 593
            K  K PRRP+EK RLD EL+L+G +GL+ KRE+WRV+Y L+++R AAR+LLTL++K+P+R+FEG ALLRR+ + G L+E++ KLDYVL L VE+FLERRLQT VFK G+AKSIHHAR+LI+Q HIRV RQ+V++PSF+VR+DSQKHI+FSL SP+GGGRPGRVKRR +
Sbjct:   10 KVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9_TRYBB (Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.225e-61
Identity = 109/170 (64.12%), Postives = 138/170 (81.18%), Query Frame = 3
Query:   75 YRNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 584
            Y N+ + +K PRRP+EK RLD E++L G+YGLRCKRE+WRV   LS++R  AR LLTL E +PRR+ EG A++RR H YGFL+E ++KLDYVL+LTV + LERRLQT+VFK G+AKS+HH+RVLI+QRHI V +Q+V IPSF+VRV S+ HI F+  SPFG GRPGRVKR
Sbjct:    4 YNNFNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKR 173          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9_NAEFO (40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.206e-52
Identity = 103/180 (57.22%), Postives = 135/180 (75.00%), Query Frame = 3
Query:   57 MVHVSFYRNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS-LTSPFGGGRPGRVKRRNI 593
            MV    YR + K    PRRP+EK R+D EL++ G+YGL+ K+E+WR+QY L+R R  AR LLTL E + +R FEG ALLRRM R G L+ES+ +LDY+L+L  E+ LERRLQT+V K G++KSIHHAR LI QRHIRVG+Q VN+PSF+VRVDS+KHI  S  ++   GG+PGR+ R+ +
Sbjct:    1 MVQNRCYRVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARHLLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKL 180          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9_ENTHI (40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.682e-46
Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 3
Query:   78 RNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR-PGRVKRRN 590
            RN+  T+K P+ PYE+ R DAEL+LVG++GL+ K+E+ RV Y L  +R  A+ +L  D K+P+R+ EG ALLRR+H  G L   QNKL++VLAL  EN LERRLQTLV++ G AKSIHHARVLIR + I+VG+Q+V++PSF+VRV+S+  I+ +  +P       GR KR+N
Sbjct:    6 RNHSITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9_PIG (40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.732e-43
Identity = 84/122 (68.85%), Postives = 104/122 (85.25%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQ 455
            KT+  PRRP+EK+RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+A SIHH RVLIRQ
Sbjct:    9 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLIRQ 130          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 69/155 (44.52%), Postives = 102/155 (65.81%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 554
            K +  P  P+ K RL  E++L+GEYGLR KRE+W     L R R+ AR+LL L  +   +  E +ALL+R++  G ++E+   LD VL+LTV + LERRLQT+V+K G+AKSI+HAR L+   HI +  + V  P ++VR D ++ I ++ TSP+
Sbjct:    9 KKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAEVREK--EEKALLKRLYDLGLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY 160          
The following BLAST results are available for this feature:
BLAST of CF834840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS9A_SCHPO1.031e-6669.7740S ribosomal protein S9-A OS=Schizosaccharomyces ... [more]
RS9_DICDI1.945e-6569.2340S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9B_YEAST9.651e-6568.4240S ribosomal protein S9-B OS=Saccharomyces cerevi... [more]
RS9A_YEAST2.150e-6467.8440S ribosomal protein S9-A OS=Saccharomyces cerevi... [more]
RS9_CAEEL1.820e-6367.2640S ribosomal protein S9 OS=Caenorhabditis elegans... [more]
RS9_TRYBB2.225e-6164.12Probable 40S ribosomal protein S9 OS=Trypanosoma b... [more]
RS9_NAEFO4.206e-5257.2240S ribosomal protein S9 OS=Naegleria fowleri GN=R... [more]
RS9_ENTHI7.682e-4653.4940S ribosomal protein S9 OS=Entamoeba histolytica ... [more]
RS9_PIG2.732e-4368.8540S ribosomal protein S9 (Fragment) OS=Sus scrofa ... [more]
RS4_IGNH41.456e-2844.5230S ribosomal protein S4P OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834840 ID=CF834840; Name=CF834840; organism=Citrus sinensis; type=EST; length=684bp
CTTTTACAAGCTCTCACAGGGGGAGAGAGTGAGGGTAGCACCAGCGGCGC
CCCTAGATGGTGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAA
GAAGCCAAGACGTCCCTATGAGAAGGCCCGATTGGATGCTGAGTTGAGAC
TTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAA
TACGCACTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGA
TGAGAAGAACCCACGACGTATTTTTGAGGGTGAGGCCCTTCTCAGGAGGA
TGCACAGGTATGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTG
TTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTTCAGACCCTTGT
GTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCA
GGCAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTT
GTAGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACAAGTCC
ATTTGGAGGCGGGCGCCCCGGAAGAGTGAAGAGAAGGAACATTAAGGCTG
CTGCCAAGAAGGCCGCAGGTGGAGATGGAGATGAAGAGGATGAACAATAA
ATTACCTTGTGTGAGCAGATAGTTTTTTTATGGT
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