CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7607 contig Csv1_Contig7607:108..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: AAPK1_MOUSE (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Mus musculus GN=Prkaa1 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.858e-37
Identity = 94/241 (39.00%), Postives = 138/241 (57.26%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVV-KMGFDQNQLVESLRNR-LQNEATVAYYLLLDNRFRVSSG---YLGAEFQETM--ESGFNRLHPIE-PAVSPVAHRAPGFMD-YQGMGLRGQLPYERKWALGLQSRAHPREIMTEVLKALQELNVGWKKIGHYNMKCR 712
            +WS GVILYAL CGTLPFDD+++P LFKKI  GI+  P +L+P    L+  ML VDPMKR  I +IR+H WF+  LP+YL   P D    +  ID+E LKEV  K    + +++  L NR  Q+   VAY+L++DNR  ++     YL     ++   +    R HP   P +     RA   +D       + Q   + KW LG++S++ P +IM EV +A+++L+  WK +  Y ++ R
Sbjct:  208 IWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRAAIKDIREHEWFKQDLPKYLF--PEDPSYSSTMIDDEALKEVCEKFECSEEEVLSCLYNRNHQDPLAVAYHLIIDNRRIMNEAKDFYLATSPPDSFLDDHHLTRPHPERVPFLVAETPRARHTLDELNPQKSKHQGVRKAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVR 446          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: AAPK2_MOUSE (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Mus musculus GN=Prkaa2 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 93/248 (37.50%), Postives = 140/248 (56.45%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVV-KMGFDQNQLVESL-RNRLQNEATVAYYLLLDNR---FRVSSGYLGAEFQETMESGFNRLHPIEPAVSPVAHRAPGF----------MDYQGMGLRGQLPYER-KWALGLQSRAHPREIMTEVLKALQELNVGWKKIGHYNMKCR 712
            +WSCGVILYAL CGTLPFDDE++P LFKKI+GG++ +P +L+     L+  ML VDP+KR TI +IR+H WF+  LP YL   P D    A  I +E +KEV  K    +++++ SL     Q++  VAY+L++DNR    + S  YL +          + +H I P + P   R P            +D         L  ++ KW LG++S++   +IM EV +A+++L   WK +  Y+++ R
Sbjct:  197 IWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPDYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYLF--PEDPSYDANVIVDEAVKEVCEKFECTESEVMNSLYSGDPQDQLAVAYHLIIDNRRIMNQASEFYLASSPPSGSFMDDSAMH-IPPGLKPHPERMPPLIADSPKARCPLDALNTTKPKSLAVKKAKWHLGIRSQSKACDIMAEVYRAMKQLGFEWKVVNAYHLRVR 441          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: AAPK2_CAEEL (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Caenorhabditis elegans GN=aak-2 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.609e-35
Identity = 91/243 (37.45%), Postives = 134/243 (55.14%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVES------LRNRLQNEATVAYYLLLDN-RFRVSSGYLGAE--FQETMESGFNRL--HPIEPAVSPVAHRAPGFMDYQGMGLRGQLPYERKWALGLQSRAHPREIMTEVLKALQELNVGWKKIGHYNMKCR 712
            VWSCGVILYAL CGTLPFDDE++P+LF+KIK G++  P  L     +L+  ML VDPMKR TI ++  H WFQ  LP YL   PP    +A  +D E ++EV +  F +  + E       L +   +  ++AY L++DN R    +  L  E  +Q T   G   +  HP   A S  +   P   + +  G         KW LG++S++ P +IM EV +A+++L++ WK +  Y++  R
Sbjct:  268 VWSCGVILYALLCGTLPFDDEHVPSLFRKIKSGVFPTPDFLERPIVNLLHHMLCVDPMKRATIKDVIAHEWFQKDLPNYLF--PPINESEASIVDIEAVREVTE--FQRYHVAEEEVTSALLGDDPHHHLSIAYNLIVDNKRIADETAKLSIEEFYQVTPNKGPGPVHRHPERIAASVSSKITPTLDNTEASGANRN--KRAKWHLGIRSQSRPEDIMFEVFRAMKQLDMEWKVLNPYHVIVR 504          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: AMPKA_DICDI (5'-AMP-activated serine/threonine-protein kinase catalytic subunit alpha OS=Dictyostelium discoideum GN=snfA PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 73/175 (41.71%), Postives = 110/175 (62.86%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKM--GFDQNQLVESLRNRLQ-NEATVAYYLLLDNRFRVSSGYLGAEFQETMESGFNRLHPIEPAVSPVAHRA 532
            VWSCGVILYA  C  LPFDDE+IP LFKKI+ G++++P  +SP   DLI +ML+VDP+KRITI EIR HPWFQ  LP+YL+ P     +  + I+  IL E+V++    D+ +++E L+   + N+  V+Y+LL+D++            + + E+  N  + + P  +P+   A
Sbjct:  213 VWSCGVILYAFLCAKLPFDDESIPMLFKKIREGVFSIPDFVSPSCADLIKKMLVVDPVKRITIHEIRNHPWFQVKLPKYLSSPHTFLSKSIQTINNSILNEMVQVYAPIDRERIIEELQKSGEVNDLIVSYHLLVDSK------------RGSYENEINSPNLVSPITTPIMSSA 375          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SNF1_CANTR (Carbon catabolite-derepressing protein kinase OS=Candida tropicalis GN=SNF1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.524e-31
Identity = 96/303 (31.68%), Postives = 146/303 (48.18%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAK-KIDEEILKEV-VKMGFDQNQLVESL----------------RNRLQNEATVAYYLLLDNRFRVSSGYLGAEFQETMESGFNRLHP------------------------------------------IEPAVSPVAHRAPGFMDYQGMGLRGQLP-------YERKWALGLQSRAHPREIMTEVLKALQELNVGWKKIGH---YNMKCRW 715
            VWS GVILY + CG LPFDDE IP LFKKI  G+YTLP++LSPGA+ L+ RML+V+P+ RITI EI +  WF+  +P YL  P    ++ +K  IDE+++  + V MG+D+++++  +                +++  NE   AY L+ +N   V    L     E +ES F  L P                                          I P   P  HRA   M+ +    + Q+P        + +W  G++SR++P ++M E+ +AL+ L   W K      + ++ RW
Sbjct:  232 VWSSGVILYVMLCGRLPFDDEFIPALFKKISNGVYTLPNYLSPGAKHLLTRMLVVNPLNRITIHEIMEDEWFKQDMPDYLLPPDLSKIKTSKIDIDEDVISALSVTMGYDRDEIISVIEKANREAAAGGATPTNQSKSTNEVLDAYLLMKENHTLVKD--LKKSKSENIES-FLSLSPPPSSSFPNPGSTSSAPGVQQSLTYQTLATVPDLSTLPNSTIAILPTSLPSIHRA-YMMETKVNDPQQQIPAPQPTKKLKTRWHFGIRSRSYPLDVMGEIYRALKNLGAEWAKPTEEELWTIRVRW 530          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SNF1_CANGA (Carbon catabolite-derepressing protein kinase OS=Candida glabrata GN=SNF1 PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.433e-31
Identity = 102/311 (32.80%), Postives = 143/311 (45.98%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQ------------AKKIDEEILKEVVK-MGFDQNQLVESLRNR----LQNEATVAYYLLLDNRFRV---------------------------SSGYLGAEFQETMESGFNRLH-------------------------PIEPAVSPVAHRAPGFMDYQGMGLRGQL------PYERKWALGLQSRAHPREIMTEVLKALQELNVGWKKIGH---YNMKCRW 715
            VWSCGVILY + C  LPFDDE+IP LFK I  G+YTLP  LSPGA DLI RMLIV+P+ RI+I EI Q  WF+  L  YL   P D  QQ             ++ID+E++  + K MG+D++++ E+L +       NE   AY L+ DN+  +                             G   +E Q+   SG  RL                           I P   P  HRA   M  QG+    ++        + +W  G++SR++P ++M E+  AL+ L   W K      + ++ RW
Sbjct:  219 VWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGASDLIKRMLIVNPLNRISIHEIMQDEWFKVDLAEYLV--PQDLKQQEQFNKKSGNEENVEEIDDEMVVTLSKTMGYDKDEIYEALESSEDTPAYNEIRNAYILIKDNKSLIKDMKQDNNVTQELDTFLSQSPPTFQQNGDGMKASEDQKKKHSG-RRLASSVTQQRTFHQPPFMDQSKEEDSTISILPTSLPQIHRAN--MLAQGLPAASKISPLVTKKSKTRWHFGIRSRSYPLDVMGEIYIALKNLGAEWAKPSEEDLWTIRVRW 524          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SNF1_SCHPO (SNF1-like protein kinase ssp2 OS=Schizosaccharomyces pombe GN=ssp2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.290e-30
Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNR 421
            VWSCG++LY +  G LPFDDE IPNLFKK+   +Y +P  LSPGA+ LI RM++ DPM+RITI EIR+ PWF  +LP YL   P + +Q +      + K    MGF ++ +VE+LR+   NE   AY LL +N+
Sbjct:  214 VWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVNLPDYLR--PMEEVQGSYADSRIVSKLGEAMGFSEDYIVEALRSDENNEVKEAYNLLHENQ 346          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SNF1_CANAL (Carbon catabolite-derepressing protein kinase OS=Candida albicans GN=SNF1 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 95/304 (31.25%), Postives = 144/304 (47.37%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAK-KIDEEILKEV-VKMGFDQNQLV----------------ESLRNRLQNEATVAYYLLLDNRFRVSSGYLGAEFQETMESGFNRLHPIEPAVSPVAHR-----APGF---MDYQGMG---------------LRGQLP---------------------------YERKWALGLQSRAHPREIMTEVLKALQELNVGWKKIGH---YNMKCRW 715
            VWS GVILY + CG LPFDDE IP LFKKI  G+YTLP++LS GA+ L+ RML+V+P+ RITI EI +  WF+  +P YL  P     + +K  +DE++++ + V MG+D++  +                 S +++  NE   AY L+ +N   V    L     E +ES  ++     P  SP  +R     APG    + YQ +                L   LP                            + +W  G++SR++P ++M E+ +AL+ L   W K      + ++ RW
Sbjct:  234 VWSAGVILYVMLCGRLPFDDEFIPALFKKISNGVYTLPNYLSAGAKHLLTRMLVVNPLNRITIHEIMEDDWFKQDMPDYLLPPDLSKNKNSKIDVDEDVIRALSVTMGYDRDCKIVNVIEKANKQVAAGNSSSQQSKSSNEILDAYLLMKENHALVKD--LKKSKSENIESFLSQ----SPPPSPFPNRGSTSSAPGVQQSLTYQTLATVPDLSTLPNSTIAILPTSLPSIHRAYMAETKQNGDPSQQHAPPPTKKSKTRWHFGIRSRSYPLDVMGEIYRALKNLGAEWAKPTEEELWTIRVRW 531          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: AAPK1_PIG (5'-AMP-activated protein kinase catalytic subunit alpha-1 (Fragments) OS=Sus scrofa GN=PRKAA1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26
Identity = 63/135 (46.67%), Postives = 80/135 (59.26%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNR 421
            +WS GVILYAL CGTLPFDD+++P LFKKI  GI+  P +L+P    L+  ML VDPMKR TI +IR+H WF+  LP+YL   P D       ID+E LK                    Q+   VAY+L++DNR
Sbjct:  158 IWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLF--PEDPSYSXTMIDDEALK--------------------QDPLAVAYHLIIDNR 270          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SNF1_YEAST (Carbon catabolite-derepressing protein kinase OS=Saccharomyces cerevisiae GN=SNF1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 70/158 (44.30%), Postives = 91/158 (57.59%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDE--------------EILKEVVK-----MGFDQNQLVESLRNRLQ----NEATVAYYLLLDNR 421
            VWSCGVILY + C  LPFDDE+IP LFK I  G+YTLP  LSPGA  LI RMLIV+P+ RI+I EI Q  WF+  LP YL   PPD     ++ +E              EI   +V      MG++++++ ESL +       NE   AY L+ +N+
Sbjct:  235 VWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPEYLL--PPDLKPHPEEENENNDSKKDGSSPDNDEIDDNLVNILSSTMGYEKDEIYESLESSEDTPAFNEIRDAYMLIKENK 390          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
AAPK1_MOUSE1.858e-3739.005'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_MOUSE5.406e-3737.505'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_CAEEL6.609e-3537.455'-AMP-activated protein kinase catalytic subunit ... [more]
AMPKA_DICDI2.777e-3341.715'-AMP-activated serine/threonine-protein kinase c... [more]
SNF1_CANTR1.524e-3131.68Carbon catabolite-derepressing protein kinase OS=C... [more]
SNF1_CANGA4.433e-3132.80Carbon catabolite-derepressing protein kinase OS=C... [more]
SNF1_SCHPO1.290e-3048.89SNF1-like protein kinase ssp2 OS=Schizosaccharomyc... [more]
SNF1_CANAL1.092e-2931.25Carbon catabolite-derepressing protein kinase OS=C... [more]
AAPK1_PIG1.927e-2646.675'-AMP-activated protein kinase catalytic subunit ... [more]
SNF1_YEAST3.287e-2644.30Carbon catabolite-derepressing protein kinase OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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