CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: TRIB1_MOUSE (Tribbles homolog 1 OS=Mus musculus GN=Trib1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            VWS GV+LY L  G  PF D +   LF KI+ G + +P H+SP AR LI  +L  +P +R+T P+I  HPWF+
Sbjct:  267 VWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQFCIPEHVSPKARCLIRSLLRREPSERLTAPQILLHPWFE 339          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKE_ARATH (CBL-interacting serine/threonine-protein kinase 14 OS=Arabidopsis thaliana GN=CIPK14 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCG+IL+ L  G LPF+D N+  +++KI  G + +P   SP  R L+ R+L  +P  RITI EI   PWF+
Sbjct:  205 IWSCGIILFVLNAGYLPFNDHNLMVMYRKIYKGEFRIPKWTSPDLRRLLTRLLDTNPQTRITIEEIIHDPWFK 277          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SAPK8_ORYSJ (Serine/threonine-protein kinase SAPK8 OS=Oryza sativa subsp. japonica GN=SAPK8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGI----YTLPSH--LSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLP 247
            VWSCGV LY +  G  PF+D   P  F+K    I    Y++P +  +SP  R LI R+ + DP  RITIPEIR H WF  +LP
Sbjct:  212 VWSCGVTLYVMVVGAYPFEDPEEPKNFRKTIQRILNVQYSIPENVDISPECRHLISRIFVGDPSLRITIPEIRSHGWFLKNLP 294          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: STK11_HUMAN (Serine/threonine-protein kinase 11 OS=Homo sapiens GN=STK11 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWF-QAHLPRYLAVPPP 271
            +WS GV LY +  G  PF+ +NI  LF+ I  G Y +P    P   DL+  ML  +P KR +I +IRQH WF + H P    VP P
Sbjct:  238 IWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPPAEAPVPIP 323          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: GIN4_YEAST (Serine/threonine-protein kinase GIN4 OS=Saccharomyces cerevisiae GN=GIN4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 56/148 (37.84%), Postives = 75/148 (50.68%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDE--NIPNLFKKIKGGIYTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAH-----------LPRYLAVPPPDTMQQAKKIDEEILKEVVKM--GFDQNQLVESLRNRLQNEATVAYYLL 409
            VWSCGVIL+AL  G LPFD+E  NI  L  K++ G + +PS   +S  A+DLI ++L VDP +RI   +I +HP  Q +           LPR      P   +    ID  IL+ +V +  G D   + E LR    N     Y LL
Sbjct:  214 VWSCGVILFALLTGRLPFDEEDGNIRTLLLKVQKGEFEMPSDDEISREAQDLIRKILTVDPERRIKTRDILKHPLLQKYPSIRDSKSIRGLPREDTYLTP-LSESNSSIDATILQNLVILWHGRDPEGIKEKLREPGANAEKTLYALL 360          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKA_ORYSJ (CBL-interacting protein kinase 10 OS=Oryza sativa subsp. japonica GN=CIPK10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 53/153 (34.64%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNRFRV---SSGY-LGAEFQE 463
            VW+CGVILY L  G LPF D+N+ N++KKI    +  PS  S   R L+ R+L  +P  RI++ EI + PWF+  L   L           K I  + + +VV +  D +    +L N +      A  L   N F +   SSG+ L A F++
Sbjct:  196 VWACGVILYVLLAGYLPFQDKNVINMYKKICKAEFKWPSWFSSDIRKLLRRILDPNPATRISVSEIMEDPWFRVGLNSDLL---------NKTIPTDKVDKVVHV--DMDSTFGNLSNNINEGKQEAENLTSLNAFDIISLSSGFDLSAMFED 337          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: YP141_YEAST (Putative serine/threonine-protein kinase YPL141C OS=Saccharomyces cerevisiae GN=YPL141C PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 36/93 (38.71%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDE-------NIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPD 274
            +WSCGVILYA+  G LP+DD+       +I  L+  I       P ++ P  RDL+ RML+ DP KRI + +I++H W + H   +L++ P +
Sbjct:  235 IWSCGVILYAILAGYLPWDDDPNNPEGSDIGRLYNYINSTPLKFPDYILPIPRDLLRRMLVSDPKKRINLKQIKKHEWLKPH-SSFLSITPDE 326          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: STK11_CHICK (Serine/threonine-protein kinase 11 OS=Gallus gallus GN=STK11 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ---AHLPRYLAVPP-PDT 277
            +WS GV LY +  G  PF+ +NI  LF+ I  G +T+P    P   DL+  ML  DP KR +I +IRQH WF+   A     + +PP P+T
Sbjct:  238 IWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGDFTIPEDCGPPLSDLLRGMLEYDPAKRFSIQQIRQHNWFRKKHAQAETLVPIPPSPET 328          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SAPK4_ORYSJ (Serine/threonine-protein kinase SAPK4 OS=Oryza sativa subsp. japonica GN=SAPK4 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDE----NIPNLFKKIKGGIYTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYL 256
            VWSCGV LY +  G  PF+D+    NI    ++I    Y +P   H+S   + LI R+ + +P++RIT+ EI+ HPWF  +LPR L
Sbjct:  183 VWSCGVTLYVMLVGAYPFEDQDDPKNIRKTIQRIMSVQYKIPDYVHISAECKQLIARIFVNNPLRRITMKEIKSHPWFLKNLPREL 268          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: PAR1_CAEBR (Serine/threonine-protein kinase par-1 OS=Caenorhabditis briggsae GN=par-1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 44/146 (30.14%), Postives = 79/146 (54.11%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPW----FQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNRFRVSSGY 442
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ + L+++P +R ++  I +  W    ++    +    PP D + + +    E L ++ ++GF++  ++ES+    + E   A YLLL  R    S Y
Sbjct:  308 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLVINPQRRSSLDNIMKDRWMNVGYEDDELKPFIEPPKDQIDEQR---IEKLIQIFQLGFNKATILESVEKE-KFEDIHATYLLLGERKSDPSRY 449          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
TRIB1_MOUSE5.444e-1347.95Tribbles homolog 1 OS=Mus musculus GN=Trib1 PE=2 S... [more]
CIPKE_ARATH5.444e-1345.21CBL-interacting serine/threonine-protein kinase 14... [more]
SAPK8_ORYSJ7.110e-1346.99Serine/threonine-protein kinase SAPK8 OS=Oryza sat... [more]
STK11_HUMAN9.286e-1343.02Serine/threonine-protein kinase 11 OS=Homo sapiens... [more]
GIN4_YEAST9.286e-1337.84Serine/threonine-protein kinase GIN4 OS=Saccharomy... [more]
CIPKA_ORYSJ9.286e-1334.64CBL-interacting protein kinase 10 OS=Oryza sativa ... [more]
YP141_YEAST1.213e-1238.71Putative serine/threonine-protein kinase YPL141C O... [more]
STK11_CHICK1.213e-1241.76Serine/threonine-protein kinase 11 OS=Gallus gallu... [more]
SAPK4_ORYSJ1.213e-1241.86Serine/threonine-protein kinase SAPK4 OS=Oryza sat... [more]
PAR1_CAEBR1.213e-1230.14Serine/threonine-protein kinase par-1 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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