CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: STK11_MOUSE (Serine/threonine-protein kinase 11 OS=Mus musculus GN=Stk11 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAV----PPPDT 277
            +WS GV LY +  G  PF+ +NI  LF+ I  G +T+P    P   DL+  ML  +P KR +I +IRQH WF+   P   A+    P PDT
Sbjct:  238 IWSAGVTLYNITTGLYPFEGDNIYKLFENIGRGDFTIPCDCGPPLSDLLRGMLEYEPAKRFSIRQIRQHSWFRKKHPLAEALVPIPPSPDT 328          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SRK2B_ARATH (Serine/threonine-protein kinase SRK2B OS=Arabidopsis thaliana GN=SRK2B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKK----IKGGIYTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYL 256
            VWSCGV LY +  G  PF+D+  P  FKK    I    Y +P   H+S   + L+ R+ + +  KRITI +I++HPWF  +LPR L
Sbjct:  183 VWSCGVTLYVMLVGAYPFEDQEDPKNFKKTIQRIMAVKYKIPDYVHISQDCKHLLSRIFVTNSNKRITIGDIKKHPWFLKNLPREL 268          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SAPK5_ORYSJ (Serine/threonine-protein kinase SAPK5 OS=Oryza sativa subsp. japonica GN=SAPK5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGI----YTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYL 256
            VWSCGV LY +  G  PF+D   P  F+K    I    Y +P   H+S   R L+ R+ + +P KRI++ EI+ HPWF  +LPR L
Sbjct:  183 VWSCGVTLYVMLVGAYPFEDPKDPKNFRKTISRIMSVQYKIPEYVHVSQPCRHLLSRIFVANPYKRISMGEIKSHPWFLKNLPREL 268          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: PAR1_CAEEL (Serine/threonine-protein kinase par-1 OS=Caenorhabditis elegans GN=par-1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 42/139 (30.22%), Postives = 77/139 (55.40%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPW----FQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNR 421
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ + L+++P +R ++  I +  W    ++    +    PP D + + +    E L ++ ++GF++  ++ES+    + E   A YLLL  R
Sbjct:  350 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLVINPQRRSSLDNIMKDRWMNVGYEDDELKPFIEPPKDQIDEQR---IEKLIQIFQLGFNKAAILESVEKE-KFEDIHATYLLLGER 484          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKT_ORYSJ (CBL-interacting protein kinase 29 OS=Oryza sativa subsp. japonica GN=CIPK29 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGV+L+ L  G LPF+D ++ N+++KI  G +  P+  SP  R L+ R+L  +P  RI   EI  HPWF+
Sbjct:  221 IWSCGVVLFVLAAGYLPFNDASLVNMYRKIYAGKFRCPAWFSPELRCLVRRILDPNPATRIDTEEIITHPWFR 293          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKH_ARATH (CBL-interacting serine/threonine-protein kinase 17 OS=Arabidopsis thaliana GN=CIPK17 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGVILY +  G LPFDD N+  + +KI  G   +P  +S GA+ +I RML  +P+ R+TI  I+ H WF+
Sbjct:  195 IWSCGVILYVILTGCLPFDDANLAVICRKIFKGDPPIPRWISLGAKTMIKRMLDPNPVTRVTIAGIKAHDWFK 267          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPK7_ORYSJ (CBL-interacting protein kinase 7 OS=Oryza sativa subsp. japonica GN=CIPK7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 2
Query:   20 WSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHL 244
            WSCGVIL+ L  G LPFDD NI ++ +K     Y LP  +S  AR L+ R+L  +P  R+ + E+  HPWF+  L
Sbjct:  209 WSCGVILFVLLAGHLPFDDSNIADMCRKAHRREYALPRWVSQPARRLVSRLLDPNPATRLAVAELATHPWFKRSL 283          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SRK2D_ARATH (Serine/threonine-protein kinase SRK2D OS=Arabidopsis thaliana GN=SRK2D PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKK----IKGGIYTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLP 247
            VWSCGV LY +  G  PF+D   P  ++K    I    Y++P   HLSP  R LI R+ + DP  RITIPEI    WF  +LP
Sbjct:  202 VWSCGVTLYVMLVGAYPFEDPQEPRDYRKTIQRILSVTYSIPEDLHLSPECRHLISRIFVADPATRITIPEITSDKWFLKNLP 284          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SRK2A_ARATH (Serine/threonine-protein kinase SRK2A OS=Arabidopsis thaliana GN=SRK2A PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKK----IKGGIYTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYL 256
            VWSCGV LY +  G  PF+D+  P  F+K    I    Y +P   H+S   ++L+ R+ + + +KRITI EI++H WF  +LPR L
Sbjct:  183 VWSCGVTLYVMLVGAYPFEDQEDPKNFRKTIQKIMAVQYKIPDYVHISQDCKNLLSRIFVANSLKRITIAEIKKHSWFLKNLPREL 268          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2D_RAT (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Rattus norvegicus GN=Camk2d PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  197 MWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
STK11_MOUSE1.584e-1241.76Serine/threonine-protein kinase 11 OS=Mus musculus... [more]
SRK2B_ARATH1.584e-1243.02Serine/threonine-protein kinase SRK2B OS=Arabidops... [more]
SAPK5_ORYSJ1.584e-1243.02Serine/threonine-protein kinase SAPK5 OS=Oryza sat... [more]
PAR1_CAEEL1.584e-1230.22Serine/threonine-protein kinase par-1 OS=Caenorhab... [more]
CIPKT_ORYSJ1.584e-1243.84CBL-interacting protein kinase 29 OS=Oryza sativa ... [more]
CIPKH_ARATH1.584e-1246.58CBL-interacting serine/threonine-protein kinase 17... [more]
CIPK7_ORYSJ1.584e-1245.33CBL-interacting protein kinase 7 OS=Oryza sativa s... [more]
SRK2D_ARATH2.069e-1245.78Serine/threonine-protein kinase SRK2D OS=Arabidops... [more]
SRK2A_ARATH2.069e-1241.86Serine/threonine-protein kinase SRK2A OS=Arabidops... [more]
KCC2D_RAT2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
back to top