CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2D_RABIT (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Oryctolagus cuniculus GN=CAMK2D PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  197 MWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2D_PIG (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Sus scrofa GN=CAMK2D PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  197 MWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2D_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Mus musculus GN=Camk2d PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  197 MWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2D_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Homo sapiens GN=CAMK2D PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  197 MWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2D_CHICK (Calcium/calmodulin-dependent protein kinase type II delta chain OS=Gallus gallus GN=CAMK2D PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  197 MWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2D_BOVIN (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Bos taurus GN=CAMK2D PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  197 MWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2A_RAT (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Rattus norvegicus GN=Camk2a PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  196 LWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2A_PONAB (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Pongo abelii GN=CAMK2A PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  196 LWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2A_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Mus musculus GN=Camk2a PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  196 LWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2A_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Homo sapiens GN=CAMK2A PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A+DLI +ML ++P KRIT  E  +HPW
Sbjct:  196 LWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
KCC2D_RABIT2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_PIG2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_MOUSE2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_HUMAN2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_CHICK2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_BOVIN2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_RAT2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_PONAB2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_MOUSE2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_HUMAN2.069e-1248.00Calcium/calmodulin-dependent protein kinase type I... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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