CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKM_ARATH (CBL-interacting serine/threonine-protein kinase 22 OS=Arabidopsis thaliana GN=CIPK22 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWF 232
            +WSCGV+L+ L  G LPF D NI  L++KI    Y LP   S   R L+ R+L  +P  RIT+ EI + PWF
Sbjct:  211 IWSCGVVLFLLNAGYLPFRDPNIMGLYRKIHKAQYKLPDWTSSDLRKLLRRLLEPNPELRITVEEILKDPWF 282          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKC_ARATH (CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ---AHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNRFRV 430
            +WSCGVIL+ L  G LPF D N+  ++KKI  G +  P   S     L+ ++L  +P KR T PEI ++ WF+    H+  Y              ++++ L  VV     ++  VES R+   +E+ + Y   L+ R RV
Sbjct:  209 IWSCGVILFVLMAGYLPFHDRNVMAMYKKIYRGEFRCPRWFSTELTRLLSKLLETNPEKRFTFPEIMENSWFKKGFKHIKFY--------------VEDDKLCNVVDDDELESDSVESDRDSAASESEIEY---LEPRRRV 332          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: AURK_DICDI (Probable serine/threonine-protein kinase aurK OS=Dictyostelium discoideum GN=aurK PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHL------PRYLAVPPPDTM 280
            VWS G++++    G  PF  +   N+F  I+      PS +SP A+DLI R+L+ DP +RIT+ ++  HPW + H       P  L +P P  M
Sbjct:  289 VWSLGILIFEFLVGRSPFTSDEEKNIFHNIQENDVYYPSSISPEAKDLISRLLVSDPHQRITLKDVINHPWIKKHAHPKSLEPTKLGLPLPSQM 382          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SRK2C_ARATH (Serine/threonine-protein kinase SRK2C OS=Arabidopsis thaliana GN=SRK2C PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGI----YTLPSHL--SPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLP 247
            VWSCGV LY +  G  PF+D + P  F+K  G I    Y +P ++  S   R L+ R+ + +P KRITI EI+ H WF  +LP
Sbjct:  183 VWSCGVTLYVMLVGAYPFEDPSDPKDFRKTIGRILKAQYAIPDYVRVSDECRHLLSRIFVANPEKRITIEEIKNHSWFLKNLP 265          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2A_DROME (Calcium/calmodulin-dependent protein kinase type II alpha chain OS=Drosophila melanogaster GN=CaMKII PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+ +IK G Y  PS     ++P A++LI +ML V+P KRIT  E  +HPW
Sbjct:  197 IWACGVILYILLVGYPPFWDEDQHRLYSQIKAGAYDYPSPEWDTVTPEAKNLINQMLTVNPNKRITAAEALKHPW 271          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2G_RAT (Calcium/calmodulin-dependent protein kinase type II subunit gamma OS=Rattus norvegicus GN=Camk2g PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A++LI +ML ++P KRIT  +  +HPW
Sbjct:  197 IWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQALKHPW 271          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2G_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit gamma OS=Mus musculus GN=Camk2g PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A++LI +ML ++P KRIT  +  +HPW
Sbjct:  197 IWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQALKHPW 271          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC2G_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit gamma OS=Homo sapiens GN=CAMK2G PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPS----HLSPGARDLIPRMLIVDPMKRITIPEIRQHPW 229
            +W+CGVILY L  G  PF DE+   L+++IK G Y  PS     ++P A++LI +ML ++P KRIT  +  +HPW
Sbjct:  197 IWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQALKHPW 271          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CSKP_RAT (Peripheral plasma membrane protein CASK OS=Rattus norvegicus GN=Cask PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLP----SHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKID 301
            VW CGVIL+ L  G LPF       LF+ I  G Y +     SH+S  A+DL+ RML++DP +RIT+ E   HPW +        +  P+T++Q +K +
Sbjct:  202 VWGCGVILFILLSGCLPFYGTK-ERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRYAYKIHLPETVEQLRKFN 299          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CSKP_MOUSE (Peripheral plasma membrane protein CASK OS=Mus musculus GN=Cask PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLP----SHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKID 301
            VW CGVIL+ L  G LPF       LF+ I  G Y +     SH+S  A+DL+ RML++DP +RIT+ E   HPW +        +  P+T++Q +K +
Sbjct:  202 VWGCGVILFILLSGCLPFYGTK-ERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRYAYKIHLPETVEQLRKFN 299          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CIPKM_ARATH7.861e-1247.22CBL-interacting serine/threonine-protein kinase 22... [more]
CIPKC_ARATH7.861e-1232.62CBL-interacting serine/threonine-protein kinase 12... [more]
AURK_DICDI7.861e-1236.17Probable serine/threonine-protein kinase aurK OS=D... [more]
SRK2C_ARATH1.027e-1143.37Serine/threonine-protein kinase SRK2C OS=Arabidops... [more]
KCC2A_DROME1.027e-1148.00Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2G_RAT1.341e-1145.33Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2G_MOUSE1.341e-1145.33Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2G_HUMAN1.341e-1145.33Calcium/calmodulin-dependent protein kinase type I... [more]
CSKP_RAT1.341e-1139.39Peripheral plasma membrane protein CASK OS=Rattus ... [more]
CSKP_MOUSE1.341e-1139.39Peripheral plasma membrane protein CASK OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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