CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SAPK9_ORYSJ (Serine/threonine-protein kinase SAPK9 OS=Oryza sativa subsp. japonica GN=SAPK9 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKK----IKGGIYTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLP 247
            VWSCGV LY +  G  PF+D   P  F+K    I G  Y++P   H+SP  RDLI R+ + +P  RIT+PEI+ HPWF  ++P
Sbjct:  201 VWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIQKILGVQYSIPDYVHISPECRDLITRIFVGNPASRITMPEIKNHPWFMKNIP 283          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SAPK6_ORYSJ (Serine/threonine-protein kinase SAPK6 OS=Oryza sativa subsp. japonica GN=SAPK6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGI----YTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYL 256
            VWSCGV LY +  G  PF+D + P  F+K  G I    Y +P   H+S   R L+ R+ + +P KRITI EIR HPWF  +LPR L
Sbjct:  183 VWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIVSIQYKIPEYVHISQDCRQLLSRIFVANPAKRITIREIRNHPWFMKNLPREL 268          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKV_ORYSJ (CBL-interacting protein kinase 31 OS=Oryza sativa subsp. japonica GN=CIPK31 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGVILY L  G LPF+D+NI  L+KKI    +T PS  S GA+ LI R+L  +P  RITI +I + PWF+
Sbjct:  204 IWSCGVILYVLLAGFLPFEDDNIIALYKKISEAQFTCPSWFSTGAKKLITRILDPNPTTRITISQILEDPWFK 276          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKP_ARATH (CBL-interacting serine/threonine-protein kinase 25 OS=Arabidopsis thaliana GN=CIPK25 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHL 244
            +WSCG+ILY L  G LPF DEN+  +++KI    +  P   SP ++ LI ++L+VDP KRI+IP I + PWF+ ++
Sbjct:  226 IWSCGIILYVLLAGFLPFQDENLMKMYRKIFKSEFEYPPWFSPESKRLISKLLVVDPNKRISIPAIMRTPWFRKNI 301          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SMKW_MOUSE (Sperm motility kinase W OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GV+LY +  G  PF    +  + +KI  G Y +P+H+S    +LI ++L V P  R +I +I +HPW +        V  P         D  I++ +  MGFD N+++ESL+ +  NE+  AY +L
Sbjct:  191 VWSLGVLLYFITTGYYPFRGSTMKEMEEKIATGTYDIPTHVSGQLENLIHQILTVPPEMRPSIEDIERHPWVKKTEVNNPTVTDP---------DYNIIEMLCGMGFDANEILESLQRKKYNESMGAYLIL 312          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKO_ORYSJ (CBL-interacting protein kinase 24 OS=Oryza sativa subsp. japonica GN=CIPK24 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            VWSCGVILY L  G LPF+++++P L+ KI  G ++ P   SPGA  LI R+L  +P  RITI +IR+  WF+
Sbjct:  200 VWSCGVILYVLMAGYLPFEEDDLPTLYDKITAGQFSCPYWFSPGATSLIHRILDPNPKTRITIEQIREDTWFK 272          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKK_ORYSJ (CBL-interacting protein kinase 20 OS=Oryza sativa subsp. japonica GN=CIPK20 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            VWSCGVIL+ L  G LPF D N+  ++KKI  G + +P   +P AR LI R+L  +P  RITI E+ +HPWF+
Sbjct:  205 VWSCGVILFLLLAGYLPFFDSNLMEMYKKITNGEFKVPDWFTPDARSLISRLLDPNPTTRITIDELVKHPWFK 277          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SAPK7_ORYSJ (Serine/threonine-protein kinase SAPK7 OS=Oryza sativa subsp. japonica GN=SAPK7 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGI----YTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYL 256
            VWSCGV LY +  G  PF+D + P  F+K  G I    Y +P   H+S   R L+ R+ + +P KRITI EIR HPWF  +LPR L
Sbjct:  183 VWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIMSIQYKIPEYVHVSQDCRQLLSRIFVANPAKRITIREIRNHPWFLKNLPREL 268          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK4_MOUSE (MAP/microtubule affinity-regulating kinase 4 OS=Mus musculus GN=Mark4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVP---PPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            +WS GVILY L  G+LPFD  N+  L +++  G Y +P ++S     ++ R L+++P KR T+ +I +  W           P   P +     K+I+      +V MG+ + ++ E+L N+  NE T  Y LL
Sbjct:  239 IWSLGVILYTLVSGSLPFDGHNLKELRERVLRGKYRVPFYMSTDCESILRRFLVLNPAKRCTLEQIMKDKWINIGYEGEELKPYTEPEEDFGDTKRIE-----VMVGMGYTREEIKEALTNQKYNEVTATYLLL 367          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: KCC4_YEAST (Probable serine/threonine-protein kinase KCC4 OS=Saccharomyces cerevisiae GN=KCC4 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 56/160 (35.00%), Postives = 86/160 (53.75%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDE--NIPNLFKKIKGGIYTLP--SHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAH-----------LPR---YLAVPPPDTMQQAKKIDEEILKEVVKM--GFDQNQLVESLRNRLQNEATVAYYLLLDNRFRVSS 436
            VWSCGVIL+AL  G LPFD+E  N+ +L  K++ G + +P  + +S  A+DLI ++L+VDP +RI I +I  HP  + +           LPR   YL          +  ID+ IL+ +V +  G   + +V  L+    N+  + Y LL   RF++ S
Sbjct:  210 VWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLY--RFKLDS 367          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
SAPK9_ORYSJ4.453e-1546.99Serine/threonine-protein kinase SAPK9 OS=Oryza sat... [more]
SAPK6_ORYSJ4.453e-1547.67Serine/threonine-protein kinase SAPK6 OS=Oryza sat... [more]
CIPKV_ORYSJ4.453e-1553.42CBL-interacting protein kinase 31 OS=Oryza sativa ... [more]
CIPKP_ARATH4.453e-1546.05CBL-interacting serine/threonine-protein kinase 25... [more]
SMKW_MOUSE7.596e-1534.35Sperm motility kinase W OS=Mus musculus PE=2 SV=1[more]
CIPKO_ORYSJ7.596e-1550.68CBL-interacting protein kinase 24 OS=Oryza sativa ... [more]
CIPKK_ORYSJ7.596e-1550.68CBL-interacting protein kinase 20 OS=Oryza sativa ... [more]
SAPK7_ORYSJ9.921e-1547.67Serine/threonine-protein kinase SAPK7 OS=Oryza sat... [more]
MARK4_MOUSE1.692e-1432.09MAP/microtubule affinity-regulating kinase 4 OS=Mu... [more]
KCC4_YEAST1.692e-1435.00Probable serine/threonine-protein kinase KCC4 OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
back to top