CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPK1_ARATH (CBL-interacting serine/threonine-protein kinase 1 OS=Arabidopsis thaliana GN=CIPK1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEE 307
            +WSCGVILY +  G LPFDD N+  L++KI  G   +P  LSPGAR +I RML  +P+ RIT+  I+   WF+     Y+   P D  ++    D++
Sbjct:  204 IWSCGVILYVILTGCLPFDDRNLAVLYQKICKGDPPIPRWLSPGARTMIKRMLDPNPVTRITVVGIKASEWFKL---EYIPSIPDDDDEEEVDTDDD 297          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SIK3_DANRE (Serine/threonine-protein kinase SIK3 homolog OS=Danio rerio GN=zgc:66101 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLP------RYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLD 415
            +WS GV+LY L CG LPFD   + NL  ++  G + +P  +S     LI  MLI++P +R+++ +I ++ W +   P        +        ++ + I+E++L  + +MGFD+ + ++SL     +  +  Y LL D
Sbjct:  239 IWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTDCEYLIRHMLILEPSRRLSMEQICKNKWMRQGDPDPEFDRLIVECEQVKVERETELINEQVLMAMAEMGFDRERTLQSLHADSYDHYSATYSLLSD 377          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKB_ARATH (CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWF 232
            VWSCG++L+ L  G LPF+D N+ N++KKI  G Y  P  +SP  +  + R+L ++P  RITI EI + PWF
Sbjct:  206 VWSCGIVLFVLVAGYLPFNDPNVMNMYKKIYKGEYRFPRWMSPDLKRFVSRLLDINPETRITIDEILKDPWF 277          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPK3_ARATH (CBL-interacting serine/threonine-protein kinase 3 OS=Arabidopsis thaliana GN=CIPK3 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGV+LY L  G LPFDD N+ NL+KKI  G +  P  LS GA  LI R+L  +PM R+T  E+ +  WF+
Sbjct:  198 MWSCGVVLYVLLAGYLPFDDSNLMNLYKKISSGEFNCPPWLSLGAMKLITRILDPNPMTRVTPQEVFEDEWFK 270          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SRK2E_ARATH (Serine/threonine-protein kinase SRK2E OS=Arabidopsis thaliana GN=SRK2E PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGI----YTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLP 247
            VWSCGV LY +  G  PF+D   P  F+K    I    Y +P   H+SP  R LI R+ + DP KRI+IPEIR H WF  +LP
Sbjct:  200 VWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRISIPEIRNHEWFLKNLP 282          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK4_HUMAN (MAP/microtubule affinity-regulating kinase 4 OS=Homo sapiens GN=MARK4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVP---PPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            +WS GVILY L  G+LPFD  N+  L +++  G Y +P ++S     ++ R L+++P KR T+ +I +  W           P   P +     K+I+      +V MG+ + ++ ESL ++  NE T  Y LL
Sbjct:  239 IWSLGVILYTLVSGSLPFDGHNLKELRERVLRGKYRVPFYMSTDCESILRRFLVLNPAKRCTLEQIMKDKWINIGYEGEELKPYTEPEEDFGDTKRIE-----VMVGMGYTREEIKESLTSQKYNEVTATYLLL 367          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SAPK3_ORYSJ (Serine/threonine-protein kinase SAPK3 OS=Oryza sativa subsp. japonica GN=SAPK3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKK----IKGGIYTLPSHL--SPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYL------------AVPPPDTMQQAKKIDEE 307
            VWSCGV LY +  G+ PF+D   P  F+K    I G  Y++P ++  S   R L+ ++ + DP KRITIPEI++H WF  +LP+ +            A PP   +++  +I +E
Sbjct:  184 VWSCGVTLYVMLVGSYPFEDPGDPRNFRKTISRILGVQYSIPDYVRVSSDCRRLLSQIFVADPSKRITIPEIKKHTWFLKNLPKEISEREKADYKDTDAAPPTQAVEEIMRIIQE 298          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SAPK3_ORYSI (Serine/threonine-protein kinase SAPK3 OS=Oryza sativa subsp. indica GN=SAPK3 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKK----IKGGIYTLPSHL--SPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYL------------AVPPPDTMQQAKKIDEE 307
            VWSCGV LY +  G+ PF+D   P  F+K    I G  Y++P ++  S   R L+ ++ + DP KRITIPEI++H WF  +LP+ +            A PP   +++  +I +E
Sbjct:  184 VWSCGVTLYVMLVGSYPFEDPGDPRNFRKTISRILGVQYSIPDYVRVSSDCRRLLSQIFVADPSKRITIPEIKKHTWFLKNLPKEISEREKADYKDTDAAPPTQAVEEIMRIIQE 298          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: PP395_ARATH (Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGVIL+ L  G LPF+D ++  L+KKI    ++ P  LS G ++LI R+L  +PM RITIPEI +  WF+
Sbjct:  197 LWSCGVILFVLLAGYLPFEDSSLTTLYKKISSADFSCPPWLSSGVKNLIVRILDPNPMTRITIPEILEDVWFK 269          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKL_ORYSJ (CBL-interacting protein kinase 21 OS=Oryza sativa subsp. japonica GN=CIPK21 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGVILY +  G LPFDD+N   L++KI  G   +P  LSPGA+D++ ++L  +P+ R+ I  IR H WF+
Sbjct:  271 IWSCGVILYVMLTGNLPFDDQNTVVLYQKILKGDARIPKWLSPGAQDILRKILDPNPITRLDITGIRAHEWFR 343          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CIPK1_ARATH1.692e-1442.27CBL-interacting serine/threonine-protein kinase 1 ... [more]
SIK3_DANRE2.210e-1429.50Serine/threonine-protein kinase SIK3 homolog OS=Da... [more]
CIPKB_ARATH2.210e-1447.22CBL-interacting serine/threonine-protein kinase 11... [more]
CIPK3_ARATH2.210e-1450.68CBL-interacting serine/threonine-protein kinase 3 ... [more]
SRK2E_ARATH2.887e-1448.19Serine/threonine-protein kinase SRK2E OS=Arabidops... [more]
MARK4_HUMAN2.887e-1432.09MAP/microtubule affinity-regulating kinase 4 OS=Ho... [more]
SAPK3_ORYSJ4.924e-1436.52Serine/threonine-protein kinase SAPK3 OS=Oryza sat... [more]
SAPK3_ORYSI4.924e-1436.52Serine/threonine-protein kinase SAPK3 OS=Oryza sat... [more]
PP395_ARATH4.924e-1449.32Pentatricopeptide repeat-containing protein At5g21... [more]
CIPKL_ORYSJ4.924e-1447.95CBL-interacting protein kinase 21 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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