CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7607 contig Csv1_Contig7607:108..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: TRIB1_HUMAN (Tribbles homolog 1 OS=Homo sapiens GN=TRIB1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHL-PRYL 256
            VWS GV+LY L  G  PF D +   LF KI+ G + +P H+SP AR LI  +L  +P +R+T PEI  HPWF++ L P Y+
Sbjct:  267 VWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQFCIPEHISPKARCLIRSLLRREPSERLTAPEILLHPWFESVLEPGYI 347          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKH_ORYSJ (CBL-interacting protein kinase 17 OS=Oryza sativa subsp. japonica GN=CIPK17 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPD 274
            +WSCGVILY +  G LPFDD NI  L++KI  G   +P  LS  A++L+ R+L  +PMKRI +  I+ H WFQ     Y+ V P D
Sbjct:  197 IWSCGVILYVMLIGYLPFDDRNIVVLYQKIFKGDTQIPKWLSHSAQNLLRRILEPNPMKRIDMAGIKSHEWFQKD---YIPVLPYD 279          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKD_ARATH (CBL-interacting serine/threonine-protein kinase 13 OS=Arabidopsis thaliana GN=CIPK13 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGVIL+ L  G LPFDD+NI  ++ KI  G +  P   SP    L+ RML  +P  RITIPEI +H WF+
Sbjct:  240 IWSCGVILFVLMAGYLPFDDKNILVMYTKIYKGQFKCPKWFSPELARLVTRMLDTNPDTRITIPEIMKHRWFK 312          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPK8_ARATH (CBL-interacting serine/threonine-protein kinase 8 OS=Arabidopsis thaliana GN=CIPK8 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWF 232
            +WSCGVILY L  G LPFD+ ++P L+ KI    ++ PS+ + GA+ LI R+L  +P  RITI EIR+  WF
Sbjct:  191 IWSCGVILYVLMAGYLPFDEMDLPTLYSKIDKAEFSCPSYFALGAKSLINRILDPNPETRITIAEIRKDEWF 262          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SMK2A_MOUSE (Sperm motility kinase 2A OS=Mus musculus GN=Smok2a PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VW+ GV+LY +  G +PFD  +I  L K+I  G Y++P  LS     LI  ++  +P  R T+ E+  HPW       +   P P   Q   K D  I+K +  +GF    + +SLR R  NE   +Y LL
Sbjct:  205 VWTLGVVLYFMVTGKIPFDAASIEKLRKQIVAGKYSVPCRLSVKLHHLITLLMTDNPELRPTVAEVMMHPWVTKGSGVF---PDPCEEQIPLKPDPAIVKAMGHIGFQAQDIEDSLRQRKFNETMASYCLL 332          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK1_HUMAN (Serine/threonine-protein kinase MARK1 OS=Homo sapiens GN=MARK1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 45/136 (33.09%), Postives = 77/136 (56.62%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWF-----QAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ ++L+++P+KR ++ +I +  W      +  L  Y   P PD     K+ID      +V MGF ++++ ++L N+  +E    Y LL
Sbjct:  240 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKLLVLNPIKRGSLEQIMKDRWMNVGHEEEELKPY-TEPDPD-FNDTKRID-----IMVTMGFARDEINDALINQKYDEVMATYILL 368          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SMOK1_MOUSE (Sperm motility kinase 1 OS=Mus musculus GN=Smok1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VW+ GV+LY +  G +PFD  +I  L K+I  G Y+ P  LS   + LI  ++  +P  R T+ E+  HPW       +   P P   Q   K D  I+K +  +GF    + +SLR R  NE   +Y LL
Sbjct:  185 VWTLGVVLYFMVIGKIPFDAASIEKLRKQIVAGKYSAPCRLSVKLQHLINLLMTDNPELRPTVAEVMVHPWITKGSGVF---PDPCEEQIPLKPDPAIVKPMGHIGFQAQDIEDSLRQRKFNETMASYCLL 312          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MRKC_DICDI (Probable serine/threonine-protein kinase MARK-C OS=Dictyostelium discoideum GN=mrkC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ---AHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATV-AYYLLLD 415
            +WS GVI+YA+ CG LP++ ++   +      G Y  P+HLS  A  ++ RM++ +P  R TI E++ HPW       +P+   +PP D + + K   E+I   ++ +GF   +    +  + +N   V  Y+LLLD
Sbjct:  229 IWSLGVIMYAVLCGNLPWEGDSQAEISFNSVHGNYEDPTHLSAEAVHILRRMIVPNPKDRATIQELKNHPWTNIDYQEIPK-SHLPPRDAVHEIK---EDIFAHLISLGFPNTKETRDIILKNENCGIVNVYHLLLD 361          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKG_ARATH (CBL-interacting serine/threonine-protein kinase 16 OS=Arabidopsis thaliana GN=CIPK16 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAV---------PPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESL 364
            +WSCG++LYAL  G LPF DEN+  L+ KI       P   S  +++L+ R+L+ DP +RI++ EI+  PWF+ +    +A          P P T ++ K ++E+         F+  Q + S+
Sbjct:  207 IWSCGIVLYALLAGFLPFIDENVMTLYTKIFKAECEFPPWFSLESKELLSRLLVPDPEQRISMSEIKMIPWFRKNFTPSVAFSIDETIPSPPEPPTKKKKKDLNEKEDDGASPRSFNAFQFITSM 331          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SRK2F_ARATH (Serine/threonine-protein kinase SRK2F OS=Arabidopsis thaliana GN=SRK2F PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDD----ENIPNLFKKIKGGIYTLPSH--LSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPD 274
            VWSCGV LY +  G  PF+D     NI N  ++I    YT+P +  +S   + L+ R+ + DP KRIT+PEI +HPWF   L   L VPP +
Sbjct:  183 VWSCGVTLYVMLVGAYPFEDPEDPRNIRNTIQRILSVHYTIPDYVRISSECKHLLSRIFVADPDKRITVPEIEKHPWF---LKGPLVVPPEE 271          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
TRIB1_HUMAN6.431e-1448.15Tribbles homolog 1 OS=Homo sapiens GN=TRIB1 PE=1 S... [more]
CIPKH_ORYSJ6.431e-1447.67CBL-interacting protein kinase 17 OS=Oryza sativa ... [more]
CIPKD_ARATH6.431e-1450.68CBL-interacting serine/threonine-protein kinase 13... [more]
CIPK8_ARATH6.431e-1450.00CBL-interacting serine/threonine-protein kinase 8 ... [more]
SMK2A_MOUSE8.399e-1435.11Sperm motility kinase 2A OS=Mus musculus GN=Smok2a... [more]
MARK1_HUMAN8.399e-1433.09Serine/threonine-protein kinase MARK1 OS=Homo sapi... [more]
SMOK1_MOUSE1.871e-1335.11Sperm motility kinase 1 OS=Mus musculus GN=Smok1 P... [more]
MRKC_DICDI1.871e-1332.12Probable serine/threonine-protein kinase MARK-C OS... [more]
CIPKG_ARATH1.871e-1332.80CBL-interacting serine/threonine-protein kinase 16... [more]
SRK2F_ARATH2.444e-1343.48Serine/threonine-protein kinase SRK2F OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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