CF834844

Overview
NameCF834844
Unique NameCF834844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10893 contig Csv1_Contig10893:58..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 6.257e-67
Identity = 113/139 (81.29%), Postives = 129/139 (92.81%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPYAGGVF ++IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPDDPLVPEIAH+YKT +A+YESTAR WT+KYA+
Sbjct:    9 ELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYAI 147
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.067e-66
Identity = 111/139 (79.86%), Postives = 130/139 (93.53%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPY+GGVF ++IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+PLVPEIAH+YKTD+A+YE+TAR WT+KYA+
Sbjct:    9 ELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.013e-65
Identity = 109/139 (78.42%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL DL +DPP+SCSAGPV +D++HWQA+IMGPPDSPYAGGVF +SIHFP DYP KPPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDPLVPEIAH+YK D+ KYE+TA+ WT+KYA+
Sbjct:    9 ELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.013e-65
Identity = 111/139 (79.86%), Postives = 121/139 (87.05%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL DLQ+DPP  CSAGPV +D+FHWQATIMGP DSPY GGVF ++IHFP DYPFKPPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVPEIAH YK D+ KY   AR WTQKYAM
Sbjct:    9 ELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 147
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.433e-65
Identity = 110/139 (79.14%), Postives = 123/139 (88.49%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL+DL +DPP  CSAGPV +D+FHWQATIMGPPDSPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   AR WT+KYAM
Sbjct:    9 ELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.484e-65
Identity = 110/139 (79.14%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL DL +DPP SCSAGPV +D++HWQA+IMGP DSPYAGGVF +SIHFP DYPFKPPKV F TK++HPNINS+G+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIA +YKTDKAKYE+TA+ WT+KYA+
Sbjct:   10 ELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYAV 148
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.649e-65
Identity = 109/139 (78.42%), Postives = 123/139 (88.49%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL+DL +DPP  CSAGPV +D+FHWQATIMGPP+SPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ +Y   AR WTQKYAM
Sbjct:    9 ELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.649e-65
Identity = 111/139 (79.86%), Postives = 121/139 (87.05%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   AR WTQKYAM
Sbjct:    9 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.649e-65
Identity = 111/139 (79.86%), Postives = 121/139 (87.05%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   AR WTQKYAM
Sbjct:    9 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.649e-65
Identity = 111/139 (79.86%), Postives = 121/139 (87.05%), Query Frame = 1 
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            EL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   AR WTQKYAM
Sbjct:    9 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
The following BLAST results are available for this feature:
BLAST of CF834844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC1_MAGGR6.257e-6781.29Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC1_COLGL1.067e-6679.86Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC4_CANAL2.013e-6578.42Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2D4_HUMAN2.013e-6579.86Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBCD1_DROME3.433e-6579.14Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC5_YEAST4.484e-6579.14Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC2_CAEEL7.649e-6578.42Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D2_XENLA7.649e-6579.86Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT7.649e-6579.86Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE7.649e-6579.86Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834844 ID=CF834844; Name=CF834844; organism=Citrus sinensis; type=EST; length=693bp
CCTTCATTGTTCTCTATATCTTTCTCCGTCTCTCTAGAACTTCGTTTCCG
TCCCCTTGGTCAAAGACGATCTTCGAGAAAACGTAGTTTGTTCCTGTCTT
CGAAGAGAATCTTGAAGGAGCTCAAGGATCTTCAGAAAGATCCTCCCACC
TCTTGCAGTGCTGGTCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAAC
CATAATGGGCCCCCCAGATAGTCCTTATGCAGGAGGTGTATTTCTAGTTT
CAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTAAGGTCGCGTTT
AGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGCAGTATATGTCT
CGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTATATCTAAGGTAT
TGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAGATGACCCTTTG
GTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCTAAGTATGAATC
AACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTAAGTATGAAATC
ATCTAGGACATAGTCTTTCATCACATAATATTTATGTATAAAATGAAGTG
TGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGAAATGATAATTG
AAGATGGTGTTCATGCACTGTCTTCCATCAAAACAAGATTGAT
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