CF834899

Overview
NameCF834899
Unique NameCF834899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_PELUB (Chaperone protein dnaK OS=Pelagibacter ubique GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.379e-28
Identity = 68/145 (46.90%), Postives = 94/145 (64.83%), Query Frame = 2
Query:  149 IGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            IGIDLGTT SCV + +  + +++ N +G RTTPS V FT D E+L+G  AK Q   NP NT+F  KRLIGR F D +V+ D+   PFK +   ++K    +  KGE  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAY
Sbjct:    5 IGIDLGTTNSCVSIMEGSQPKVLENAEGARTTPSVVAFTEDGEKLVGQPAKRQAVTNPENTIFAVKRLIGRSFEDPTVKKDIAAAPFKIV--NSEKGDAWIEAKGE--KYSPSQISAFILQKMKETAEKYLGQEVTKAVITVPAY 145          
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_METCA (Chaperone protein dnaK OS=Methylococcus capsulatus GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.379e-28
Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 2
Query:  149 IGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            IGIDLGTT SCV + +  + ++I N +G RTTPS V FT D E L+G +AK Q   NP NT+F  KRLIGRR+ D  VQ D+K+ P+  +        + V      K+ A  EIS+ VL+K+++ AEAYLG  +  AV+TVPAY
Sbjct:    5 IGIDLGTTNSCVAILEGGKPRVIENSEGARTTPSIVAFTADNEVLVGQSAKRQAITNPKNTLFAIKRLIGRRYKDDVVQKDIKMVPYTIVEAENGDAWVEVG----GKKMAPPEISARVLMKLKKDAEAYLGEEVKEAVITVPAY 145          
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_IDILO (Chaperone protein dnaK OS=Idiomarina loihiensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.379e-28
Identity = 72/148 (48.65%), Postives = 93/148 (62.84%), Query Frame = 2
Query:  140 GPPIGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            G  IGIDLGTT SCV V    + ++I N +G+RTTPS V FTD  E L+G  AK Q   NP  T+F  KRLIGRRF D  VQ D+ + P+K +   AD     V   G++K  A  +IS+ VL KM++ AE +LG  + +AV+TVPAY
Sbjct:    2 GKTIGIDLGTTNSCVAVLDGGKARVIENGEGDRTTPSVVAFTDDGEILVGSPAKRQAVTNPNKTLFAIKRLIGRRFQDEEVQRDIGIMPYKIV--KADNGDAWVEIDGDKK--APPQISAEVLKKMKKTAEEFLGEKVTDAVITVPAY 145          
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_GEOBB (Chaperone protein dnaK OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.379e-28
Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  149 IGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            IGIDLGTT SCV V +     +IAN +G+RTTPS + F ++ ERL+G  AK Q   NP NT++  KRLIGR+F   +V+ D+ + PFK +   AD     V  +G+  +++  EIS+MVL KM++ AE YLG  + +AV+TVPAY
Sbjct:    5 IGIDLGTTNSCVAVMEGGEPVVIANAEGSRTTPSMIAFAESGERLVGQQAKRQAVTNPENTLYAIKRLIGRKFETEAVKKDIAISPFKIV--KADNSDAWVEVRGQ--KYSPPEISAMVLQKMKKTAEDYLGEAVTDAVITVPAY 145          
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_BLOFL (Chaperone protein dnaK OS=Blochmannia floridanus GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.379e-28
Identity = 68/148 (45.95%), Postives = 96/148 (64.86%), Query Frame = 2
Query:  140 GPPIGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            G  IG+DLGTT SCV + + ++ +++ N +G+RTTPS V +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+K+ P+K I+       + +  KG+  + A  +IS+ +L KM++ AE YLG  +  AV+TVPAY
Sbjct:    2 GKIIGVDLGTTNSCVAIIESNKPRVLENSEGDRTTPSVVAYTQDGEILVGQPAKRQSVTNPKNTLFAIKRLIGRRFQDQEVQRDVKIMPYKIISSNNGDAWLDI--KGQ--KIAPPQISAEILKKMKKTAEDYLGENVTEAVITVPAY 145          
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_AERHH (Chaperone protein dnaK OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.379e-28
Identity = 71/148 (47.97%), Postives = 91/148 (61.49%), Query Frame = 2
Query:  140 GPPIGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            G  IGIDLGTT SCV +   D  ++I N +G+RTTPS + + D  E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+++ P+      AD     V  KG  K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAY
Sbjct:    2 GKIIGIDLGTTNSCVAILDGDHARVIENAEGDRTTPSIIAYADDGEILVGQPAKRQAITNPKNTLFAIKRLIGRRFEDDEVQRDLEIMPY--AIAKADNGDAWVEVKG--KKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAY 145          
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_SERP5 (Chaperone protein dnaK OS=Serratia proteamaculans (strain 568) GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.801e-28
Identity = 70/148 (47.30%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  140 GPPIGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            G  IGIDLGTT SCV +    + +++ N +G+RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D   Q D  + P+K +A  AD     V  KG+  + A  +IS+ VL KM++ AE YLG  +  AV+TVPAY
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGGKARVLENSEGDRTTPSIIAYTQDGEILVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEAQRDKDIMPYKIVA--ADNGDAWVEVKGQ--RVAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAY 145          
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPB (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB18) GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.801e-28
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 2
Query:  140 GPPIGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            G  IGIDLGTT SCV V      ++I N +G RTTPS V F+D  ERL+G  AK Q   NP  T F  KRL+GRR+ D  V+ D KL P+K +        +    + + K ++  ++S+ +L KM+E AEA+LGA ++ AV+TVPAY
Sbjct:    2 GKVIGIDLGTTNSCVAVMDGKAPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAWV----EADAKTYSPSQVSAFILQKMKETAEAHLGAKVDQAVITVPAY 145          
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_RHOCS (Chaperone protein dnaK OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.801e-28
Identity = 68/145 (46.90%), Postives = 88/145 (60.69%), Query Frame = 2
Query:  149 IGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            IGIDLGTT SCV + +  + ++I N +G RTTPS V FT   ERL+G  AK Q   NP NT F  KRLIGRR+ D   Q D  L P++ + G      +    +   KQ++  EIS+ +L KM+E AE YLG  +  AV+TVPAY
Sbjct:    5 IGIDLGTTNSCVAIMEGTQAKVIENAEGARTTPSMVAFTQGGERLVGQPAKRQAVTNPENTFFAIKRLIGRRYDDPLTQKDKGLVPYRIVGGKNGDAWV----ESHGKQYSPSEISAFILQKMKETAENYLGEKVTQAVITVPAY 145          
BLAST of CF834899 vs. ExPASy Swiss-Prot
Match: DNAK_PROVI (Chaperone protein dnaK OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.801e-28
Identity = 67/148 (45.27%), Postives = 95/148 (64.19%), Query Frame = 2
Query:  140 GPPIGIDLGTTYSCVGVWQHDRVQIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQGDMKLWPFKGIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATINNAVVTVPAY 580
            G  IGIDLGTT SCV V Q  +  +I N +GNRTTPS V FT + +RL+G AAK Q   NPTNT+F  KR +GR+F +  V  + K+ P+  +     +  + +N    +K ++ +EIS+M+L KM++ AE +LG  +  AV+TVPAY
Sbjct:    2 GKIIGIDLGTTNSCVAVMQGTQPTVIENSEGNRTTPSMVAFTKNGDRLVGQAAKRQAITNPTNTIFSIKRFVGRKFDE--VPNEKKIAPY-AVVNEGGEARVKIN----DKTYSPQEISAMILQKMKQTAEDFLGEKVTEAVITVPAY 142          
The following BLAST results are available for this feature:
BLAST of CF834899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PELUB1.379e-2846.90Chaperone protein dnaK OS=Pelagibacter ubique GN=d... [more]
DNAK_METCA1.379e-2847.59Chaperone protein dnaK OS=Methylococcus capsulatus... [more]
DNAK_IDILO1.379e-2848.65Chaperone protein dnaK OS=Idiomarina loihiensis GN... [more]
DNAK_GEOBB1.379e-2847.59Chaperone protein dnaK OS=Geobacter bemidjiensis (... [more]
DNAK_BLOFL1.379e-2845.95Chaperone protein dnaK OS=Blochmannia floridanus G... [more]
DNAK_AERHH1.379e-2847.97Chaperone protein dnaK OS=Aeromonas hydrophila sub... [more]
DNAK_SERP51.801e-2847.30Chaperone protein dnaK OS=Serratia proteamaculans ... [more]
DNAK_RHOPB1.801e-2845.27Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOCS1.801e-2846.90Chaperone protein dnaK OS=Rhodospirillum centenum ... [more]
DNAK_PROVI1.801e-2845.27Chaperone protein dnaK OS=Prosthecochloris vibriof... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06F01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834899 ID=CF834899; Name=CF834899; organism=Citrus sinensis; type=EST; length=581bp
GCTCTNAATAGTGGATCCCCGGGCTGCAGGGTTTTATTTTCCATTAAGAG
ATCTATTTTTGTTTTTCTTCGCTGTCAAAGCCTTCTACTTTATTCTCCTT
TTCCTTGCTTGAGTTTTGATAATGGCCGGAAAAGGAGAGGGACCACCGAT
CGGCATCGATTTGGGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATG
ACAGAGTCCAGATTATCGCCAATGACCAAGGGAACCGGACGACGCCGTCT
TATGTGGGGTTCACCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAA
CCAGGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGA
TTGGTAGGAGATTCAGCGATACATCAGTCCAAGGCGATATGAAGCTATGG
CCATTTAAGGGGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAA
CTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGG
TGCTCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATT
AACAATGCAGTCGTTACTGTCCCTGCTTACT
back to top