CF834924

Overview
NameCF834924
Unique NameCF834924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            M KFLK  K  ++++GRYAG+K VIVK  D+G++   +GH LVAGI++YP KV +K  AKK AK++++K F+K+VNY HL+
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLL 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27_CANAL (60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            M KF+K  K  I+++GRYAG+K VIVK  D+GT+   + H +VAGI++ P KV +K  AKK  K+++VK FVKLVNY HLM
Sbjct:    1 MAKFIKSGKVAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27B_SCHPO (60S ribosomal protein L27-B OS=Schizosaccharomyces pombe GN=rpl27b PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 40/81 (49.38%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            MVK LKP K  ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ AK+SRVK F+K++NY HLM
Sbjct:    1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27A_SCHPO (60S ribosomal protein L27-A OS=Schizosaccharomyces pombe GN=rpl27a PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 40/81 (49.38%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            MVK LKP K  ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ A++SRVK F+K+VNY HLM
Sbjct:    1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27_CAEEL (60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 39/81 (48.15%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            M K +KP K V++L+G+YAGRKAV+VK  D+G  +R Y H ++AGI +YP KV +    KK  K++++K F+K+V+Y HL+
Sbjct:    1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLL 81          
The following BLAST results are available for this feature:
BLAST of CF834924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27A_YEAST1.278e-2053.0960S ribosomal protein L27-A OS=Saccharomyces cerev... [more]
RL27_CANAL5.371e-1954.3260S ribosomal protein L27 OS=Candida albicans GN=R... [more]
RL27B_SCHPO5.371e-1949.3860S ribosomal protein L27-B OS=Schizosaccharomyces... [more]
RL27A_SCHPO5.371e-1949.3860S ribosomal protein L27-A OS=Schizosaccharomyces... [more]
RL27_CAEEL2.947e-1748.1560S ribosomal protein L27 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06F18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834924 ID=CF834924; Name=CF834924; organism=Citrus sinensis; type=EST; length=736bp
CGGTTTATTTTTTTTTTTTTTTATTAAGAACCAAATATTATCCCCGATTA
GAATTCCACAATTGCAACAACCCGAATTACAGTCATCAAAAATGTATCCT
CTCATCTCACAACCACCCCTTTTTCTTATCTCTTTGGGAACCATATGAAT
TTCCCAAGAAATATCCACTCCCTCAAGCCATTGTGCCTAAAGTTTATATA
CTCCAGGCTAAGCCCGCTGTTTTTATTCTGGTTGTGTGCGGGGAAAATCT
GCAGAAAAATAAGCTTTGAAAGGTAAAGGCCATAGCCATGTCTCTTCCAT
AGGTTACTTCATATCTCATTCAAGTTAATGAAAGATCACGTATTATCAGA
AAGACTAAAGTGGTTACAAAGTTGTGCCTCCACCATCTGACATAAGAGAT
ACAGCAGCTGCAGCAGCAGTAGGAACAACCCCTGTTGAAACACCTGGTTT
TGACAAATGGAGAGCCGCGGGTGCGCGAGGAGCGAGAGTTGAAATGGTGA
AGTTTCTGAAACCAAACAAGGCCGTGATCCTTCTTCAGGGCCGTTACGCC
GGCCGGAAGGCGGTGATCGTGAAGTCGTTCGACGACGGGACCCGCGAGAG
GGCGTACGGGCACTGTTTGGTAGCGGGGATAAAGAAGTACCCGGGCAAGG
TCATCCGCAAGGACTCGGCGAAGAAGACAGCGAAGAAGTCGCGCGTCAAG
GCCTTCGTCAAGTTGGTCAACTACCAGCACCTGATG
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