CF834938

Overview
NameCF834938
Unique NameCF834938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig907 contig Csv1_Contig907:100..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834938 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.427e-37
Identity = 79/150 (52.67%), Postives = 97/150 (64.67%), Query Frame = 1
Query:  262 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASG 708
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQL GGERV FLFTIKQ    G
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQFDGKG 183          
BLAST of CF834938 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 82/157 (52.23%), Postives = 99/157 (63.06%), Query Frame = 1
Query:  244 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASG 708
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQLAGGERVPFLFTIK L+A G
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLLAKG 227          
BLAST of CF834938 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 63/129 (48.84%), Postives = 90/129 (69.77%), Query Frame = 1
Query:  334 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP 714
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQP 157          
BLAST of CF834938 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 63/129 (48.84%), Postives = 90/129 (69.77%), Query Frame = 1
Query:  334 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP 714
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQP 157          
BLAST of CF834938 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.743e-27
Identity = 63/128 (49.22%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  343 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP 714
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL GGERVPFLFTIK LVA  +P
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNLVAQTQP 159          
BLAST of CF834938 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 59/129 (45.74%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  334 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP 714
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL GGE+VPF FTIK LV   +P
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKNLVGKTEP 160          
BLAST of CF834938 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.205e-22
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  319 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVAS 705
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L GGE VPFLFT+K LVAS
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFTVKGLVAS 156          
BLAST of CF834938 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  343 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP 714
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L GGE VPF FT+K    + +P
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFTGTTEP 160          
BLAST of CF834938 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 42/71 (59.15%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  478 KAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIK 690
            KAEG+NKN+PPDFQ TKLMTR                         DGIDYAAVTVQL GGERVPFLFTIK
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLFTIK 55          
The following BLAST results are available for this feature:
BLAST of CF834938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE2.427e-3752.67Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR1.573e-3652.23Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB1.577e-2848.84Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN1.577e-2848.84Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP1.743e-2749.22Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA54.443e-2345.74Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE72.205e-2243.51Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY31.429e-2142.06Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU1.871e-1359.15Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834938 ID=CF834938; Name=CF834938; organism=Citrus sinensis; type=EST; length=714bp
GGGATACTAGCAAGTAACCCACAAGTGGTAGGGAGCAAGATGGCAGCCTC
GTTACAAGCCGCAGCTACACTGATGCAACCCACCAAGGTGGGTGTGGTAC
CCGCTCGCAGCAGCAGCCTGCAGCTGAGGTCTTCACAGAGCGTTTCGAAG
GCTTTTGGTGTCGACTCAGCTGGTGCTAGGATCTCTTGCTCTTTGAATAA
TGACTTGAAGGATTTGGCTCAGAAATGTGTTGATGCTACCAAGATCGCTG
GCTTTGCCCTCGCCACTTCTGCTCTCGTCGTTTCGGGAGCAAGTGCTGAA
GGTGTTCCAAAGAGGCTAACCTATGATGAAATCCAGAGCAAGACATACAT
GGAAGTGAAGGGAACCGGAACTGCTAACCAGTGCCCAACCATTGATGGCG
GAGTTGACTCTTTTGCCTTCAAACCTGGCAAATACCAGGCTAAGAAGTTC
TGCCTAGAACCAACTTCCTTCACTGTCAAGGCTGAGGGTGTCAACAAGAA
TGCCCCACCAGATTTCCAGAACACCAAGCTCATGACCCGCCTTACCTACA
CCCTTGACGAGATTGAGGGACCTTTTGAAGTGTCCCCCGATGGCACCATT
AAGTTTGTGGAGAAGGATGGAATTGACTATGCTGCTGTGACAGTTCAGCT
GGCTGGAGGCGAGCGTGTGCCCTTCCTTTTCACCATCAAACAATTGGTAG
CATCAGGCAAACCT
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