CF834944

Overview
NameCF834944
Unique NameCF834944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX1_MOUSE (Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.095e-26
Identity = 54/105 (51.43%), Postives = 79/105 (75.24%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG +  PLI D  ++I++ YG+L  D+GI+ RGLFIID +G+++Q ++N+L +GRSV+E +R +QA QF  ++  EVCP+GWKPG  ++KPD   SKEYF+
Sbjct:   93 KQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDEIIRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVNKSKEYFS 196          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TDX_TRYBR (Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 54/107 (50.47%), Postives = 82/107 (76.64%), Query Frame = -1
Query:  214 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFAAI 534
            K GGLG +  P++ D TKSI K+YG+L  + G+A RGLFIID +  ++Q ++N+L +GR+V+ETLR ++A QFV+++  EVCP+ WKPG K+MK DP  S++YF+++
Sbjct:   93 KKGGLGTMNIPILADKTKSIMKAYGVLKEEDGVAYRGLFIIDPQQNLRQITINDLPVGRNVDETLRLVKAFQFVEKH-GEVCPANWKPGSKTMKADPNGSQDYFSSM 198          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX4_HUMAN (Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.097e-26
Identity = 52/104 (50.00%), Postives = 77/104 (74.04%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            + GGLG ++ PL+ D+T  ISK YG+ + D G  LRGLFIID +G+++Q ++N+L +GRSV+ETLR +QA Q+  ++  EVCP+GWKPG +++ PDP    +YF
Sbjct:  165 RQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSETIIPDPAGKLKYF 267          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX4_RAT (Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.065e-25
Identity = 52/104 (50.00%), Postives = 76/104 (73.08%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            + GGLG ++ PL+ D+   ISK YG+ + D G  LRGLFIID +GV++Q ++N+L +GRSV+ETLR +QA Q+  ++  EVCP+GWKPG +++ PDP    +YF
Sbjct:  167 RQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSETIIPDPAGKLKYF 269          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX4_MOUSE (Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.065e-25
Identity = 52/104 (50.00%), Postives = 76/104 (73.08%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            + GGLG ++ PL+ D+   ISK YG+ + D G  LRGLFIID +GV++Q ++N+L +GRSV+ETLR +QA Q+  ++  EVCP+GWKPG +++ PDP    +YF
Sbjct:  168 RQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSETIIPDPAGKLKYF 270          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX4_BOVIN (Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.522e-25
Identity = 51/104 (49.04%), Postives = 75/104 (72.12%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            + GGLG +  PL+ D+   ISK YG+ + D G  LRGLFIID +G+++Q ++N+L +GRSV+ETLR +QA Q+  ++  EVCP+GWKPG +++ PDP    +YF
Sbjct:  168 RQGGLGSINIPLLADLNHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSETIIPDPAGKLKYF 270          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TDX2_BRUMA (Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.283e-24
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            K GGLG +  P++      IS++YG+L  D GIA RGLFIID +G++ Q ++N+L +GRSV+ETLR +QA QFV ++  EVCP+ W PG +++KP  K SK YF
Sbjct:   94 KMGGLGQMNIPILAYTNHVISRAYGVLKEDDGIAYRGLFIIDPKGILGQITINDLPVGRSVDETLRLIQAFQFVDKH-GEVCPANWHPGSETIKPGVKESKAYF 196          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TSA2_YEAST (Peroxiredoxin TSA2 OS=Saccharomyces cerevisiae GN=TSA2 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 5.086e-24
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            K GGLG +K PL+ D   S+S+ YG+LI  +GIALRGLFIID +G+I+  ++N+L++GR+V E LR ++  Q+  +N   V P  W PG  ++KPD K SKEYF
Sbjct:   89 KDGGLGPVKVPLLADKNHSLSRDYGVLIEKEGIALRGLFIIDPKGIIRHITINDLSVGRNVNEALRLVEGFQWTDKN-GTVLPCNWTPGAATIKPDVKDSKEYF 191          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TDX_ECHGR (Thioredoxin peroxidase OS=Echinococcus granulosus GN=TPX PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.643e-24
Identity = 51/106 (48.11%), Postives = 74/106 (69.81%), Query Frame = -1
Query:  217 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFAA 534
            K GG+  ++ P++ D    IS+ YG+LI DQGIALRGLFIID +GV++Q ++N+L +GRSV+E LR L A QF  ++  EVCP+ W+PG K+ KP     K + ++
Sbjct:   89 KEGGVQGMRIPMLADTNHKISRDYGVLIEDQGIALRGLFIIDDKGVLRQITINDLPVGRSVDEALRLLDAFQFTDKH-GEVCPANWQPGSKTFKPSAGDLKSFMSS 193          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX1_DROME (Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.643e-24
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            K GGLG +  PL+ D +  +++ YG+L  + GI  RGLFIID +  ++Q +VN+L +GRSVEETLR +QA Q+  +   EVCP+ WKPG K+M  DP  SKEYF
Sbjct:   88 KQGGLGSMDIPLLADKSMKVARDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQYT-DKYGEVCPANWKPGQKTMVADPTKSKEYF 190          
The following BLAST results are available for this feature:
BLAST of CF834944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PRDX1_MOUSE1.095e-2651.43Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1[more]
TDX_TRYBR1.430e-2650.47Thioredoxin peroxidase OS=Trypanosoma brucei rhode... [more]
PRDX4_HUMAN7.097e-2650.00Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1[more]
PRDX4_RAT2.065e-2550.00Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2... [more]
PRDX4_MOUSE2.065e-2550.00Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1[more]
PRDX4_BOVIN3.522e-2549.04Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1[more]
TDX2_BRUMA2.283e-2450.96Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2... [more]
TSA2_YEAST5.086e-2450.00Peroxiredoxin TSA2 OS=Saccharomyces cerevisiae GN=... [more]
TDX_ECHGR6.643e-2448.11Thioredoxin peroxidase OS=Echinococcus granulosus ... [more]
PRDX1_DROME6.643e-2450.96Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834944 ID=CF834944; Name=CF834944; organism=Citrus sinensis; type=EST; length=534bp
AGAGGCCCTTTAAAAGAGATTTTGTTGTGCCTGCATTACAAAGGAACCCT
TAAGGGGGACAAATCCAGTCCAATGCATTTATTCCCCACAGGCATGCTCC
GCAAAACTCAACAGATAAGTAGCAAAATCACATTACATGGAAAAACAAAA
CTCATCTACCCCTCCCTAATAGACATAGATATGCATACCAGGTTCCAATG
CTAACCCCTCTTATATAGCTGCAAAGTACTCCTTGCTGAGTTTTGGGTCT
GGCTTCATGGATTTGACCCCGGGCTTCCATCCTGATGGGCAAACTTCATC
TGGGTTCTCCTGCACAAACTGCAAGGCCTGAAGTGTTCTCAGTGTCTCTT
CAACACTCCTACCAATGGCAAGGTTGTTAACGGATGACTGCTGGATGACT
CCTTCTTTGTCAATAATAAAGAGTCCTCTCAATGCAATTCCCTGATCACG
GATCAGAATACCATAGGATTTTGAAATTGATTTGGTGATATCACCAATTA
GGGGGTACTTCAAATCACCAAGACCACCTGACTT
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