CF834944

Overview
NameCF834944
Unique NameCF834944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TSA1_YEAST (Peroxiredoxin TSA1 OS=Saccharomyces cerevisiae GN=TSA1 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.133e-23
Identity = 51/106 (48.11%), Postives = 74/106 (69.81%), Query Frame = -1
Query:  217 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFAA 534
            K GGLG +  PL+ D   S+S+ YG+LI ++G+ALRGLFIID +GVI+  ++N+L +GR+V+E LR ++A Q+  +N   V P  W PG  ++KP  + SKEYF A
Sbjct:   89 KEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKN-GTVLPCNWTPGAATIKPTVEDSKEYFEA 193          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TDX1_BRUMA (Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.933e-23
Identity = 51/105 (48.57%), Postives = 74/105 (70.48%), Query Frame = -1
Query:  214 GGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFAAI 528
            GGLGD+K P++ D  K I+ ++G+L  + GI+ RGLF+ID  G I+ S VN+L++GRSV+E  RTL+A QFV+++  EVCP+ W     ++KP  K SKEYF  +
Sbjct:  122 GGLGDMKIPVLADFNKDIANAFGVLDHETGISYRGLFLIDPSGEIRHSLVNDLSVGRSVDEAFRTLKAFQFVEKH-GEVCPANWSDDKPTIKPGIKESKEYFKKV 225          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: YCF42_ODOSI (Putative peroxiredoxin ycf42 OS=Odontella sinensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.592e-23
Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            + GGL DL YPL+ D+T++I++ Y +L  D+G+A  GLFIIDKEG+IQ  +VNNL  GR++ E LR L+++Q+V+ENP   CP  W  G +     P  SK YF
Sbjct:   92 EEGGLEDLNYPLVSDLTQTITRDYQVLT-DEGLAFPGLFIIDKEGIIQYYTVNNLLCGRNINELLRILESIQYVKENPGYACPVNWNFGDQVFYSHPLKSKIYF 194          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TSA1_SCHPO (Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN=tpx1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.137e-22
Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG +  PL+ D +  +S+ YG+LI D G+A RGLF+ID +GV++Q ++N+L +GRSV+E LR L A QFV+E+  EVCP+ W  G  ++  D K  ++YF+
Sbjct:   89 KEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEH-GEVCPANWHKGSDTI--DTKNPEKYFS 190          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TDX1_CAEEL (Probable peroxiredoxin prdx-3 OS=Caenorhabditis elegans GN=prdx-3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.645e-22
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            K GGLGD+  PL+ D  K I+ S+G+L ++ G++ RGLF+ID  G ++ ++ N+L +GRSV+ETLR L+A QF  +   EVCP+ W     ++KP    SKEYF
Sbjct:  119 KDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLIDPSGTVRHTTCNDLPVGRSVDETLRVLKAFQF-SDKHGEVCPADWHEDSPTIKPGVATSKEYF 221          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TDX_FASHE (Thioredoxin peroxidase OS=Fasciola hepatica PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.385e-21
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = -1
Query:  217 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFAA 534
            K GG+G L +PL+ D   S+S+++G+L  +QG   RG F+ID +GV++Q +VN+  +GRSVEE LR L A  F +E+  EVCP+ WKP  K++ P P  SK YF++
Sbjct:   88 KVGGIGQLNFPLLADKNMSVSRAFGVLDEEQGNTYRGNFLIDPKGVLRQITVNDDPVGRSVEEALRLLDAFIFHEEH-GEVCPANWKPKSKTIVPTPDGSKAYFSS 192          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TDX_ONCMY (Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.086e-21
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIA-LRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG +K PL+ D  +SIS  YG+       +   GLFIID +GV++Q ++N+L +GR V+E LR +QA QF  ++  EVCP+GWKPG  ++KPD + SK++F+
Sbjct:   93 KHGGLGAMKIPLVADTMRSISTDYGVFEGGMRASPTGGLFIIDDKGVLRQITINDLPVGRCVDEILRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKDFFS 197          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: YKUU_BACSU (Thioredoxin-like protein ykuU OS=Bacillus subtilis GN=ykuU PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.412e-20
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = -1
Query:  256 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSM 534
            K  GLG LKYPL  D    +S+ YG+LI ++G+ALRGLFII+ EG +Q  +V +  IGR V+ETLR LQALQ        +CP+ WKPG K++
Sbjct:   93 KENGLGQLKYPLAADTNHEVSREYGVLIEEEGVALRGLFIINPEGELQYQTVFHNNIGRDVDETLRVLQALQ-----TGGLCPANWKPGQKTL 180          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX2_PONAB (Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.927e-19
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = -1
Query:  289 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVC 534
            K GGLG L  PL+ D+T+ +S+ YG+L  D+GIA RGLFIID +GV++Q +VN+L +GRSV+E LR +QA Q+  E+ +  C
Sbjct:   92 KEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEGPC 173          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: CR29_ENTHI (Putative peroxiredoxin OS=Entamoeba histolytica PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.098e-18
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = -1
Query:  217 GGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFAA 528
            GG+G L +PL+ DI + IS  YG+L  + GIA RG  IID +G ++   +N+  IGRS EET+R ++A+QF  E+   VCP  WKPG  +++P P   K+Y  A
Sbjct:  130 GGVGKLTFPLVSDIKRCISIKYGMLNVEAGIARRGYVIIDDKGKVRYIQMNDDGIGRSTEETIRIVKAIQFSDEH-GAVCPLNWKPGKDTIEPTPDGIKKYLTA 232          
The following BLAST results are available for this feature:
BLAST of CF834944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
TSA1_YEAST1.133e-2348.11Peroxiredoxin TSA1 OS=Saccharomyces cerevisiae GN=... [more]
TDX1_BRUMA1.933e-2348.57Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 ... [more]
YCF42_ODOSI9.592e-2349.04Putative peroxiredoxin ycf42 OS=Odontella sinensis... [more]
TSA1_SCHPO2.137e-2247.62Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN... [more]
TDX1_CAEEL3.645e-2246.15Probable peroxiredoxin prdx-3 OS=Caenorhabditis el... [more]
TDX_FASHE1.385e-2147.17Thioredoxin peroxidase OS=Fasciola hepatica PE=2 S... [more]
TDX_ONCMY3.086e-2147.17Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1[more]
YKUU_BACSU3.412e-2051.61Thioredoxin-like protein ykuU OS=Bacillus subtilis... [more]
PRDX2_PONAB4.927e-1952.44Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3[more]
CR29_ENTHI1.098e-1845.19Putative peroxiredoxin OS=Entamoeba histolytica PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834944 ID=CF834944; Name=CF834944; organism=Citrus sinensis; type=EST; length=534bp
AGAGGCCCTTTAAAAGAGATTTTGTTGTGCCTGCATTACAAAGGAACCCT
TAAGGGGGACAAATCCAGTCCAATGCATTTATTCCCCACAGGCATGCTCC
GCAAAACTCAACAGATAAGTAGCAAAATCACATTACATGGAAAAACAAAA
CTCATCTACCCCTCCCTAATAGACATAGATATGCATACCAGGTTCCAATG
CTAACCCCTCTTATATAGCTGCAAAGTACTCCTTGCTGAGTTTTGGGTCT
GGCTTCATGGATTTGACCCCGGGCTTCCATCCTGATGGGCAAACTTCATC
TGGGTTCTCCTGCACAAACTGCAAGGCCTGAAGTGTTCTCAGTGTCTCTT
CAACACTCCTACCAATGGCAAGGTTGTTAACGGATGACTGCTGGATGACT
CCTTCTTTGTCAATAATAAAGAGTCCTCTCAATGCAATTCCCTGATCACG
GATCAGAATACCATAGGATTTTGAAATTGATTTGGTGATATCACCAATTA
GGGGGTACTTCAAATCACCAAGACCACCTGACTT
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