CF834944

Overview
NameCF834944
Unique NameCF834944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TSAA_HELPJ (Probable peroxiredoxin OS=Helicobacter pylori J99 GN=tsaA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.171e-18
Identity = 44/103 (42.72%), Postives = 69/103 (66.99%), Query Frame = -1
Query:  226 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEY 534
            + GG+G + +P++ DITKSIS+ Y +L  ++ IALRG F+IDK   ++ + +N+L +GR+ +E LR + AL   +E+  EVCP+GW+ G K MK   +   EY
Sbjct:   90 EKGGIGQVSFPMVADITKSISRDYDVLF-EEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEH-GEVCPAGWRKGDKGMKATHQGVAEY 190          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TSAA_HELPY (Probable peroxiredoxin OS=Helicobacter pylori GN=tsaA PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 5.447e-18
Identity = 44/103 (42.72%), Postives = 69/103 (66.99%), Query Frame = -1
Query:  226 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEY 534
            + GG+G + +P++ DITKSIS+ Y +L  ++ IALRG F+IDK   ++ + +N+L +GR+ +E LR + AL   +E+  EVCP+GW+ G K MK   +   EY
Sbjct:   90 EKGGIGQVTFPMVADITKSISRDYDVLF-EEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEH-GEVCPAGWRKGDKGMKATHQGVAEY 190          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX2_PIG (Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.531e-17
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = -1
Query:  316 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQF 534
            K GGLG LK PL+ D+T+++S  YG+L  D+GIA RGLFIID +GV++Q +VN+L +GR V+E LR +Q  Q+
Sbjct:   53 KEGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAYRGLFIIDGKGVLRQITVNDLPVGRXVDEALRLVQGXQY 125          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: R20K_CLOPA (Putative peroxiredoxin in rubredoxin operon OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = -1
Query:  268 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPG 534
            K GGLG + +P+  D T  +S  YGI I ++GI+LRGLFIID EG+++ S V++L +GRSV+ETLR L+A Q        +C   W  G
Sbjct:   91 KQGGLGKINFPIASDKTTEVSTKYGIQIEEEGISLRGLFIIDPEGIVRYSVVHDLNVGRSVDETLRVLKAFQ-----TGGMCALDWHEG 174          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRXU_EUBAC (Selenocysteine-containing peroxiredoxin prxU OS=Eubacterium acidaminophilum GN=prxU PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.989e-16
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  238 GDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPD-EVCPSGWKPGVKSMKPDPKL 519
            G + +P++ D   ++   YG+   + G+  RG F+ID +G+IQ   V  L +GR+V ETLR +QA Q V+E    EV PSGWKPG K++KP P L
Sbjct:   93 GGIPFPMLSDGGGNVGTLYGVYDPEAGVENRGRFLIDPDGIIQGYEVLILPVGRNVSETLRQIQAFQLVRETKGAEVAPSGWKPGKKTLKPGPGL 187          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAES (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ahpC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.098e-16
Identity = 35/94 (37.23%), Postives = 64/94 (68.09%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  L+Y +IGD +++I++++ +L  + G+A RG FIID +GV+Q + +N   IGR     +  ++A Q+V+++P EVCP+ W+ G +S++P
Sbjct:   88 SDAISKLEYSMIGDPSQTITRNFDVLDEESGLAQRGTFIIDPDGVVQAAEINADGIGRDASTLVNKIKAAQYVRQHPGEVCPAKWEEGSESLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAEQ (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ahpC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 35/94 (37.23%), Postives = 64/94 (68.09%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  L+Y +IGD +++I++++ +L  + G+A RG FIID +GV+Q + +N   IGR     +  ++A Q+V+++P EVCP+ W+ G +S++P
Sbjct:   88 SDAISKLEYSMIGDPSQTITRNFDVLDEETGLAQRGTFIIDPDGVVQAAEINADGIGRDASTLVNKIKAAQYVRQHPGEVCPAKWEEGSESLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAAW (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MW2) GN=ahpC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  + Y +IGD +++I++++ +L    G+A RG FIID +GV+Q S +N   IGR        ++A Q+V++NP EVCP+ W+ G K+++P
Sbjct:   88 SDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAAS (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MSSA476) GN=ahpC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  + Y +IGD +++I++++ +L    G+A RG FIID +GV+Q S +N   IGR        ++A Q+V++NP EVCP+ W+ G K+++P
Sbjct:   88 SDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAAR (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MRSA252) GN=ahpC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  + Y +IGD +++I++++ +L    G+A RG FIID +GV+Q S +N   IGR        ++A Q+V++NP EVCP+ W+ G K+++P
Sbjct:   88 SDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
The following BLAST results are available for this feature:
BLAST of CF834944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
TSAA_HELPJ4.171e-1842.72Probable peroxiredoxin OS=Helicobacter pylori J99 ... [more]
TSAA_HELPY5.447e-1842.72Probable peroxiredoxin OS=Helicobacter pylori GN=t... [more]
PRDX2_PIG3.531e-1754.79Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 ... [more]
R20K_CLOPA2.288e-1647.19Putative peroxiredoxin in rubredoxin operon OS=Clo... [more]
PRXU_EUBAC2.989e-1644.21Selenocysteine-containing peroxiredoxin prxU OS=Eu... [more]
AHPC_STAES5.098e-1637.23Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAEQ6.658e-1637.23Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAW6.658e-1638.30Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAS6.658e-1638.30Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAR6.658e-1638.30Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834944 ID=CF834944; Name=CF834944; organism=Citrus sinensis; type=EST; length=534bp
AGAGGCCCTTTAAAAGAGATTTTGTTGTGCCTGCATTACAAAGGAACCCT
TAAGGGGGACAAATCCAGTCCAATGCATTTATTCCCCACAGGCATGCTCC
GCAAAACTCAACAGATAAGTAGCAAAATCACATTACATGGAAAAACAAAA
CTCATCTACCCCTCCCTAATAGACATAGATATGCATACCAGGTTCCAATG
CTAACCCCTCTTATATAGCTGCAAAGTACTCCTTGCTGAGTTTTGGGTCT
GGCTTCATGGATTTGACCCCGGGCTTCCATCCTGATGGGCAAACTTCATC
TGGGTTCTCCTGCACAAACTGCAAGGCCTGAAGTGTTCTCAGTGTCTCTT
CAACACTCCTACCAATGGCAAGGTTGTTAACGGATGACTGCTGGATGACT
CCTTCTTTGTCAATAATAAAGAGTCCTCTCAATGCAATTCCCTGATCACG
GATCAGAATACCATAGGATTTTGAAATTGATTTGGTGATATCACCAATTA
GGGGGTACTTCAAATCACCAAGACCACCTGACTT
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