CF834944

Overview
NameCF834944
Unique NameCF834944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAAN (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain N315) GN=ahpC PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  + Y +IGD +++I++++ +L    G+A RG FIID +GV+Q S +N   IGR        ++A Q+V++NP EVCP+ W+ G K+++P
Sbjct:   88 SDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAAM (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ahpC PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  + Y +IGD +++I++++ +L    G+A RG FIID +GV+Q S +N   IGR        ++A Q+V++NP EVCP+ W+ G K+++P
Sbjct:   88 SDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAAC (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain COL) GN=ahpC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  + Y +IGD +++I++++ +L    G+A RG FIID +GV+Q S +N   IGR        ++A Q+V++NP EVCP+ W+ G K+++P
Sbjct:   88 SDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAAB (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ahpC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  + Y +IGD +++I++++ +L    G+A RG FIID +GV+Q S +N   IGR        ++A Q+V++NP EVCP+ W+ G K+++P
Sbjct:   88 SDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAA8 (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain NCTC 8325) GN=ahpC PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  + Y +IGD +++I++++ +L    G+A RG FIID +GV+Q S +N   IGR        ++A Q+V++NP EVCP+ W+ G K+++P
Sbjct:   88 SDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAA3 (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain USA300) GN=ahpC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  + Y +IGD +++I++++ +L    G+A RG FIID +GV+Q S +N   IGR        ++A Q+V++NP EVCP+ W+ G K+++P
Sbjct:   88 SDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: YNDH_BACYN (Putative peroxiredoxin in ndh 5'region (Fragment) OS=Bacillus sp. (strain YN-1) PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.136e-15
Identity = 35/91 (38.46%), Postives = 61/91 (67.03%), Query Frame = -1
Query:  250 LGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 522
            +G + Y +IGD ++++S+++ +L    G+A RG FIID +GV+Q + +N   IGR     +  ++A Q+V+ NP EVCP+ W+ G +++KP
Sbjct:   70 IGKITYAMIGDPSQTLSRNFDVLNEVSGLADRGTFIIDPDGVVQAAEINAEGIGRDASTLVNKIKAAQYVRNNPGEVCPAKWQEGDETLKP 160          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAHJ (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ahpC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.136e-15
Identity = 34/94 (36.17%), Postives = 64/94 (68.09%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  ++Y +IGD +++I++++ +L  + G+A RG FIID +GV+Q + +N   IGR     +  ++A Q+V+++P EVCP+ W+ G +S++P
Sbjct:   88 SDAISKIQYQMIGDPSQTITRNFDVLDEEAGLAQRGTFIIDPDGVVQAAEINADGIGRDASTLVNKIKAAQYVRQHPGEVCPAKWEEGSESLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_STAS1 (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ahpC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.305e-15
Identity = 33/94 (35.11%), Postives = 64/94 (68.09%), Query Frame = -1
Query:  250 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 531
            S  +  ++Y +IGD +++I++++ +L  + G+A RG FI+D +GV+Q + VN   IGR     +  ++A Q+V+++P EVCP+ W+ G ++++P
Sbjct:   88 SDAISKIQYTMIGDPSQTITRNFDVLDEELGLAQRGTFIVDPDGVVQAAEVNADGIGRDASTLVHKIKAAQYVRQHPGEVCPAKWEEGSETLQP 181          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_176 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPK----LSKEYFA 534
            ++GG+G +K+P++ DI   I KSY I   +  IALR  F+ID+  +I+   VN+L  GR+++E +R + AL F      EVCP  WK G + MK   +      K+YF+
Sbjct:   91 ENGGIGKIKFPMVSDIKHEIQKSYHIEHPELNIALRASFLIDENWIIRHQVVNDLPFGRNIDEMIRMIDALNF-HNKYGEVCPVNWKHGQEGMKASQEGVSSYLKKYFS 198          
The following BLAST results are available for this feature:
BLAST of CF834944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
AHPC_STAAN6.658e-1638.30Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAM6.658e-1638.30Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAC6.658e-1638.30Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAB6.658e-1638.30Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAA86.658e-1638.30Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAA36.658e-1638.30Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
YNDH_BACYN1.136e-1538.46Putative peroxiredoxin in ndh 5'region (Fragment) ... [more]
AHPC_STAHJ1.136e-1536.17Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAS13.305e-1535.11Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
TSAA_BUCAP5.637e-1538.53Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834944 ID=CF834944; Name=CF834944; organism=Citrus sinensis; type=EST; length=534bp
AGAGGCCCTTTAAAAGAGATTTTGTTGTGCCTGCATTACAAAGGAACCCT
TAAGGGGGACAAATCCAGTCCAATGCATTTATTCCCCACAGGCATGCTCC
GCAAAACTCAACAGATAAGTAGCAAAATCACATTACATGGAAAAACAAAA
CTCATCTACCCCTCCCTAATAGACATAGATATGCATACCAGGTTCCAATG
CTAACCCCTCTTATATAGCTGCAAAGTACTCCTTGCTGAGTTTTGGGTCT
GGCTTCATGGATTTGACCCCGGGCTTCCATCCTGATGGGCAAACTTCATC
TGGGTTCTCCTGCACAAACTGCAAGGCCTGAAGTGTTCTCAGTGTCTCTT
CAACACTCCTACCAATGGCAAGGTTGTTAACGGATGACTGCTGGATGACT
CCTTCTTTGTCAATAATAAAGAGTCCTCTCAATGCAATTCCCTGATCACG
GATCAGAATACCATAGGATTTTGAAATTGATTTGGTGATATCACCAATTA
GGGGGTACTTCAAATCACCAAGACCACCTGACTT
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