CF834944

Overview
NameCF834944
Unique NameCF834944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAI (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU182 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.362e-15
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K+GG+G + +P++ D+   I KSYGI   + GIALR  F+ID   +I+   VN+L  GR++ + +R + AL F      EVCP+ WK G + +    +   +Y +
Sbjct:   91 KNGGIGKINFPMVSDVKHDIQKSYGIQHPNLGIALRASFLIDSNWIIRHQVVNDLPFGRNITDMIRMVDALDF-HNKFGEVCPANWKKGEEGITASSEGVSQYLS 194          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_BACSU (Alkyl hydroperoxide reductase subunit C OS=Bacillus subtilis GN=ahpC PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.362e-15
Identity = 35/91 (38.46%), Postives = 60/91 (65.93%), Query Frame = -1
Query:  250 LGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 522
            +  + Y +IGD +++IS+++ +L  + G+A RG FIID +GVIQ   +N   IGR     +  ++A Q+V++NP EVCP+ W+ G +++ P
Sbjct:   89 ISKITYAMIGDPSQTISRNFDVLDEETGLADRGTFIIDPDGVIQTVEINAGGIGRDASNLVNKVKAAQYVRQNPGEVCPAKWEEGGETLTP 179          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TSAA_BUCBP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_171 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  214 SGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFAAI 531
            +G +  + + ++ D+ + I +SYGI     G+ALR  F+IDK  +I+  ++N+L  GR++ ETLR + AL F  E   EVCP+ WK G   +K   +   +Y   I
Sbjct:   92 NGQIDKINFTMVSDLKREIQRSYGIEHPQLGVALRATFLIDKNRIIRHQTINDLPFGRNISETLRMIDALHF-YEKYGEVCPANWKKGDTGIKTTQEGIHKYLEKI 196          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_SHIFL (Alkyl hydroperoxide reductase subunit C OS=Shigella flexneri GN=ahpC PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.772e-14
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  250 LGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 522
            +  +KY +IGD T ++++++  +  D+G+A R  F++D +G+IQ   V    IGR   + LR ++A Q+V  +P EVCP+ WK G  ++ P
Sbjct:   89 IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_ECOLI (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli (strain K12) GN=ahpC PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.772e-14
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  250 LGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 522
            +  +KY +IGD T ++++++  +  D+G+A R  F++D +G+IQ   V    IGR   + LR ++A Q+V  +P EVCP+ WK G  ++ P
Sbjct:   89 IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_ECOL6 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O6 GN=ahpC PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.772e-14
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  250 LGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 522
            +  +KY +IGD T ++++++  +  D+G+A R  F++D +G+IQ   V    IGR   + LR ++A Q+V  +P EVCP+ WK G  ++ P
Sbjct:   89 IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_ECO57 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O157:H7 GN=ahpC PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.772e-14
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  250 LGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 522
            +  +KY +IGD T ++++++  +  D+G+A R  F++D +G+IQ   V    IGR   + LR ++A Q+V  +P EVCP+ WK G  ++ P
Sbjct:   89 IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_SALTY (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhimurium GN=ahpC PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.232e-14
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  250 LGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 522
            +  +KY +IGD T ++++++  +  D+G+A R  F++D +G+IQ   V    IGR   + LR ++A Q+V  +P EVCP+ WK G  ++ P
Sbjct:   89 IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: AHPC_SALTI (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhi GN=ahpC PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.232e-14
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  250 LGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKP 522
            +  +KY +IGD T ++++++  +  D+G+A R  F++D +G+IQ   V    IGR   + LR ++A Q+V  +P EVCP+ WK G  ++ P
Sbjct:   89 IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 179          
The following BLAST results are available for this feature:
BLAST of CF834944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
TSAA_BUCAI7.362e-1536.19Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
AHPC_BACSU7.362e-1538.46Alkyl hydroperoxide reductase subunit C OS=Bacillu... [more]
TSAA_BUCBP2.797e-1435.85Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
AHPC_SHIFL4.772e-1436.26Alkyl hydroperoxide reductase subunit C OS=Shigell... [more]
AHPC_ECOLI4.772e-1436.26Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECOL64.772e-1436.26Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECO574.772e-1436.26Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_SALTY6.232e-1436.26Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_SALTI6.232e-1436.26Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834944 ID=CF834944; Name=CF834944; organism=Citrus sinensis; type=EST; length=534bp
AGAGGCCCTTTAAAAGAGATTTTGTTGTGCCTGCATTACAAAGGAACCCT
TAAGGGGGACAAATCCAGTCCAATGCATTTATTCCCCACAGGCATGCTCC
GCAAAACTCAACAGATAAGTAGCAAAATCACATTACATGGAAAAACAAAA
CTCATCTACCCCTCCCTAATAGACATAGATATGCATACCAGGTTCCAATG
CTAACCCCTCTTATATAGCTGCAAAGTACTCCTTGCTGAGTTTTGGGTCT
GGCTTCATGGATTTGACCCCGGGCTTCCATCCTGATGGGCAAACTTCATC
TGGGTTCTCCTGCACAAACTGCAAGGCCTGAAGTGTTCTCAGTGTCTCTT
CAACACTCCTACCAATGGCAAGGTTGTTAACGGATGACTGCTGGATGACT
CCTTCTTTGTCAATAATAAAGAGTCCTCTCAATGCAATTCCCTGATCACG
GATCAGAATACCATAGGATTTTGAAATTGATTTGGTGATATCACCAATTA
GGGGGTACTTCAAATCACCAAGACCACCTGACTT
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