CF834949
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = -1 Query: 200 RNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 406 RN+ CP VN+DKLW++V ++ + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ A+E Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEE 135
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = -1 Query: 200 RNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 406 RN+ CP VN+DKLW++V ++ + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ A+E Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEE 135
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=4) HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13 Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = -1 Query: 200 RNKFHCPIVNVDKLWSMVPQEVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 406 RN+ CP VN+DK W++V ++ + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ A+E Sbjct: 65 RNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEE 135
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: R27A2_ENTHI (60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13 Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = -1 Query: 200 NKFHCPIVNVDKLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 403 NK++CP +NVD LWS+V ++V+A+ + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A + Sbjct: 66 NKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQ 136
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: R27A1_ENTHI (60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.158e-13 Identity = 34/72 (47.22%), Postives = 52/72 (72.22%), Query Frame = -1 Query: 200 NKFHCPIVNVDKLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 403 NK++CP +NVD LWS+V ++++A+ + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A + Sbjct: 66 NKYYCPSINVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQ 136
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: R27A3_ENTHI (60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.372e-12 Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = -1 Query: 200 NKFHCPIVNVDKLWSMVPQEV----KAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 403 NK++CP +NVD LWS+V ++V K + + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A + Sbjct: 66 NKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQ 136
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12 Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = -1 Query: 200 RNKFHCPIVNVDKLWSMVPQEVK---AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 406 +N+ CP +N+DKLW++V ++ + AK + P+ID GY+KVLGKG LP+ QPV+VKAK S+ A+E Sbjct: 65 KNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAKFFSRKAEE 135
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11 Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = -1 Query: 200 FHCPIVNVDKLWSMVPQEVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 397 F P++N+DKLW+++P++ + + ASK+ P+ID GY K+LGKG +P N PV+VKA+ VSK A+E Sbjct: 68 FWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIVKARFVSKLAEE 136 The following BLAST results are available for this feature:
BLAST of CF834949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834949 ID=CF834949; Name=CF834949; organism=Citrus sinensis; type=EST; length=409bpback to top |