CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  296 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP 541
            GGESI G +F DE +   +H  P  LSMAN+G  T GSQFF+    T WLD KH VFG++ +GM+VV+ I  V   + +T+KP
Sbjct:  551 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 632          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL1_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryptococcus neoformans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = -1
Query:  293 GGESISG*KFADENFVK-KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPV 541
            GG SI G +FADE   + +  G GIL+MANSGP T GSQFF+  A T +LDGKH +FG++  GM  ++ +E V   + + ++PV
Sbjct:   68 GGTSIYGDRFADEIHPELRFVGAGILAMANSGPNTNGSQFFITCAPTPYLDGKHTIFGRVSSGMKTIQRLEAV--RTDKDDRPV 149          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  326 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKV 541
            GG SI G  F DE FV KH+ P +LSMAN GP +  SQFF+ TA     +GKHVVFG++++G +VV  ++ +
Sbjct:   84 GGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNL 155          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = -1
Query:  269 GESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 538
            GESI G  F DENF   H   G+L M N G  + GSQF++      +LD K+V FGQL+EG DV+  +E V + + R  +  VI   GQL
Sbjct:  216 GESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYVAFGQLIEGTDVLHHLESVPTENERPIQNCVITASGQL 305          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  296 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP 541
            GGESI G +F DE +   +H  P  LSMAN+G  T GSQFF+    T WLD KH VFG++ +GM+VV+ I  V   + +T+KP
Sbjct:  553 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNV-KVNPQTDKP 634          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = -1
Query:  275 GESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 538
            GESI G  F DENF   H   G+L MAN G  + GSQF++    T +LD K V FGQL+EG +V+K +E V + + R      I D G
Sbjct:  220 GESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFVAFGQLIEGTEVLKQLELVPTQNERPIHMCRITDSG 307          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL2_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryptococcus neoformans GN=CYP8 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 42/80 (52.50%), Postives = 48/80 (60.00%), Query Frame = -1
Query:  311 GGESISG*KFADENFVK---KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSG 541
            GGES  G  F DE+  K   KH   G+LSMANSGP T GSQFF     T  LDGKH VFG+LV G + +  IE+V    G
Sbjct:  375 GGESYWGEPFRDEHGEKGAYKHDSRGVLSMANSGPRTNGSQFFFTFRPTPHLDGKHTVFGKLVGGEETLDKIERVNVRPG 454          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 42/82 (51.22%), Postives = 49/82 (59.76%), Query Frame = -1
Query:  299 GGESISG*KFADENFVK-KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNK 541
            GGESI    F DE     KH  P  +SMANSGP T GSQFF+ T  T WLDGKH +F +   G+DVV  IE+     G T+K
Sbjct:  516 GGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIEQ-----GETDK 592          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL2_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Mus musculus GN=Ppil2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  296 GGESISG*KFADENFVK-KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP 541
            GGES  G  F DE      HTG G+LSMANSGP T  SQFF+      +LD KH +FG++V G D + A+E V  S  +T++P
Sbjct:  341 GGESFWGKPFKDEFRPNLSHTGRGVLSMANSGPNTNKSQFFITFRSCAYLDKKHTIFGRVVGGFDTLTAMENV-ESDPKTDRP 422          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL2_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo sapiens GN=PPIL2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  296 GGESISG*KFADENFVK-KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP 541
            GGES  G  F DE      HTG GILSMANSGP +  SQFF+      +LD KH +FG++V G DV+ A+E V  S  +T++P
Sbjct:  341 GGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV-ESDPKTDRP 422          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPWD1_BOVIN4.821e-1449.40Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL1_CRYNE6.296e-1447.62Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryp... [more]
CYP9_CAEBR1.074e-1350.00Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL6_BOVIN1.403e-1344.44Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
PPWD1_MOUSE2.393e-1349.40Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL6_HUMAN3.125e-1345.45Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
PPIL2_CRYNE5.330e-1352.50Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryp... [more]
CYP9_SCHPO6.961e-1351.22Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]
PPIL2_MOUSE1.187e-1248.19Peptidyl-prolyl cis-trans isomerase-like 2 OS=Mus ... [more]
PPIL2_HUMAN1.187e-1249.40Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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