CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 541
            GGESI G  F DE+F +KH   G+LSMAN GP T  SQFF+ T  T  LDGKHVVFG++V G +VV+ +E +      R    V+IA+CG+L
Sbjct:   82 GGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMIANCGEL 173          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_YEAST (Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccharomyces cerevisiae GN=CPR6 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 541
            GGESI   KF DENF  KH  P +LSMAN+GP T GSQ F+    T  LDGKHVVFG++++G  +V+ IE         NKP   V I DCG L
Sbjct:   83 GGESIYDEKFEDENFTVKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIQGKRIVRLIEN-QQCDQENNKPLRDVKIDDCGVL 175          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  332 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE 541
            GG SI G  F DENF  KH G G +SMAN+GP T GSQFF+   K  WLDGKHVVFG++++GM VV +IE
Sbjct:  108 GGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIH_MOUSE (Peptidyl-prolyl cis-trans isomerase H OS=Mus musculus GN=Ppih PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = -1
Query:  332 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE 541
            G  SI    FADENF  +H+ PG+LSMANSGP T G QFF+  +K +WLDGKHVVFG++++G+ V++ IE
Sbjct:   86 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIE 155          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  332 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE 541
            GG SI G  F DENF  KH G G +SMAN+GP T GSQFF+   K  WLDGKHVVFG++++GM VV +IE
Sbjct:  108 GGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.567e-17
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 541
            G  SI G  F DE    +H  PG L MAN GP T G QF+V T   +WL+GKH VFG+++EGMD V AIE V + +      PV+I +CG++
Sbjct:   97 GSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTVAAQWLNGKHTVFGKVIEGMDTVYAIEDVKTDTDDHPIDPVIIVNCGEM 188          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = -1
Query:  341 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVK 541
            GG SI G +FADE N   +HTG GILSMAN+GP T GSQFF+  A T WLDGKH +FG++ +GM+VVK
Sbjct:   66 GGTSIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSDGMNVVK 133          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 47/92 (51.09%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 541
            GGESI G  F DE FV KH  P ++SMAN GP T GSQFF+ T     L+  HVVFG++V G +VV  IE + ++S  R    VVI +CG+L
Sbjct:   85 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL1_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae GN=CYP1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.355e-16
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = -1
Query:  293 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPV 541
            GG SI G KF DE +   KHTG GILSMAN+GP T GSQFFV  A T WLDGKH +FG++  GM  +K +  V   +G  ++PV
Sbjct:   64 GGSSIFGEKFEDEIDPGLKHTGAGILSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRVKSGMGTIKRMGLV--KTGSEDRPV 145          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.355e-16
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = -1
Query:  269 GGESISG*KFADEN--FVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGR-TNKPVVIADCGQL 541
            G  SI G  F DE+     +H  PG L MAN GP T G QF+V T   +WLDGKH VFG+++EGMD + AIE V + +     +PVVI++CG++
Sbjct:   98 GSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEI 191          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
CYP11_RHIOR1.226e-1752.17Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
PPID_YEAST1.601e-1752.13Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccha... [more]
PPIC_MOUSE1.601e-1761.43Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIH_MOUSE2.091e-1757.14Peptidyl-prolyl cis-trans isomerase H OS=Mus muscu... [more]
PPIC_BOVIN2.091e-1761.43Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
CYPR_CALVI3.567e-1747.83Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIL1_RHIOR4.659e-1763.24Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
CYP1_BRUMA4.659e-1751.09Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPIL1_GIBZE1.355e-1654.76Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibb... [more]
CYPR_DROME1.355e-1647.87Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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