CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = -1
Query:  269 SISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQL 532
            SI G KF DENF  KH GPG+LSMAN+G  T G QFF+  AKT++LD KHVVFG++++GM  V+ IE V + +    K P+V+  CGQL
Sbjct:   95 SIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQLS 541
            GG+SI G +F DENF   H  PG+LSMAN+GP + GSQFF+ T KT WLDG HVVFG+++ G D+VK I K  + +   +KP   V I   GQLS
Sbjct:   97 GGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISK--AETDNRDKPLEDVKIIKSGQLS 189          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE--KVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  KH+  G+LSMAN+G  T GSQFF+ T  T WLDGKHVVFG+++EG DVV+ IE  K G       +P+ IA  G+L
Sbjct:  105 GGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPA-EPIKIAKSGEL 196          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVV-IADCGQL 541
            GG+SI G KF DENF  +HT  G+LSMAN+G  T GSQFF+ T  T WLDG+HVVFG+++EG +VV+AIE V    G   + VV I   G+L
Sbjct:   90 GGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKSGEL 181          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIH_RHIOR (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = -1
Query:  269 G*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 523
            G +FADENF++KHTG G+LSMANSGP + G QFF+     ++LDGKHVVFG+LV+G+  ++ IE V +  + R   PV I +CGQ+
Sbjct:   93 GDRFADENFIEKHTGAGLLSMANSGPNSNGCQFFITCDACDFLDGKHVVFGRLVDGLLTLRKIENVATGPNNRPKLPVKITECGQM 178          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 541
            GG+SI G +F DENF  KHT  G+LSMAN+G  T GSQFF+ T  T WLDGKHVVFG+++EG ++++ IE   S +G  ++P   V IA  G+L
Sbjct:  105 GGKSIYGDRFKDENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIE--NSKTGAADRPVEAVKIAKSGEL 196          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF +KH  P +LSMAN+GP T GSQ F+  A T  LDGKHVVFG++++G  VV+AIE+  +++ R    V I  CG L
Sbjct:   84 GGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADRPLADVRIDACGIL 174          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 541
            GG+SI G  F DENF  KH  PG LSMAN G  T GSQFF+ T    WLDGKHVVFG++++GMDVV  IE V + S     K V+I + G+L
Sbjct:  105 GGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIVESGEL 196          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 541
            GGESI G KF DE F   H  P +LSMAN+GP T GSQFF+ T +T  LD KHVVFG+L+ G  +V+ IE+  +    R  +PV I DCG+L
Sbjct:   81 GGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGEL 172          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPV---VIADCGQL 541
            GGESI G KF DENF   H  P +LSMAN+G  T GSQFF+ T  T  L+GKHVVFG++++G  +V+ +E+     G  +KPV   +I+DCG+L
Sbjct:   86 GGESIYGEKFEDENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLER--CDKGENDKPVEDWIISDCGEL 177          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
CYP11_CAEEL1.185e-2055.06Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPIB_SCHPO2.021e-2053.68Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB_NEUCR2.021e-2055.91Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_ASPOR2.021e-2055.43Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIH_RHIOR2.639e-2053.49Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus ... [more]
PPIB_GIBZE2.639e-2053.19Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
PPID_ASHGO3.447e-2054.95Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
CYPD_YEAST4.502e-2055.43Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
PPID_YARLI5.880e-2053.26Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
PPID_DEBHA1.310e-1951.06Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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