CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_USTMA (Peptidyl-prolyl cis-trans isomerase D OS=Ustilago maydis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQLS 541
            GGESI G KF DE+   KH  P +LSMAN+G  T GSQFF+ T  T  LDGKHVVFG++++G  VV+ +E V + +S R  + V I DCG+L+
Sbjct:   95 GGESIYGEKFQDEDLTGKHDVPFLLSMANAGANTNGSQFFITTVPTPHLDGKHVVFGRVLKGKGVVRRVESVETVASDRPKEDVKIVDCGELT 187          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = -1
Query:  269 FADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE--KVG-SSSGRTNKPVVIADCGQL 514
            F DENF  KH  PG+LSMAN+GP T GSQFF+ T  T +LD KHVVFG++ EGMDVVK +E  K G       N  VVI+ CG++
Sbjct:   98 FEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 541
            GGESI G  F DENF+ KH   G LSMAN+G  T GSQFF+ TA+T  L+G H VFG++VEG D+VK +E   +  S R     VI DCGQL
Sbjct:   84 GGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 541
            GGESI G KF DENF  KH  P +LSMAN+GP T GSQ F+    T  LDGKHVVFG+++EG  +V+ IEK  +  G T+KP   V +  CG L
Sbjct:   83 GGESIYGEKFEDENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDG-TDKPMHDVKVEGCGLL 175          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = -1
Query:  272 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTA-KTEWLDGKHVVFGQLVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQ 541
            GG+SI G  F DENF  KH   G LSMAN G  T GSQFF+ T  +  WLDGKHVVFGQ+V+GMDVV  I+ V   ++ +  + V IA CG+
Sbjct:  107 GGKSIYGDTFPDENFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHVVFGQVVDGMDVVNYIQHVSRDANDKPLEAVKIAKCGE 198          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 541
            G  SI G KF DENF  KH   G+LSMANSGPGT G QFF+      +LDGKHVVFG++V+G+  ++ +E V   +G  N+P   V I  CG++
Sbjct:   65 GSRSIYGDKFDDENFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHVVFGKVVDGLLTLRKMENV--PTGANNRPKMAVRITQCGEM 156          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  269 FADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEK--VGSSSGRTNKPVVIADCGQL 514
            F DENF  KH  PG+LSMAN+G  + G QFF+ T   ++LDGKHVVFG+++EG D+VK IE   VG++S R    V I +CG++
Sbjct:   91 FPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANS-RPKSNVAIVECGEM 173          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVV---IADCGQL 541
            GG SI G  F DEN   KH  P +LSMAN GP T GSQFF+ + +   LDGKH VFG++++G++VVKAIE +   +G  +KPV    I  CG++
Sbjct:   85 GGYSIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENL--ETGNEDKPVCKVEITHCGEM 176          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  332 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE 541
            GG SI G  F DENF  KH G G +SMAN+GP T GSQFF+   K  WLDGKHVVFG++++GM VV +IE
Sbjct:  108 GGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIE 177          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF  KH  P +LSMAN+G  T GSQ F+    T  LDGKHVVFG++++G  +V+ IE      + +  K V I DCG L
Sbjct:   85 GGESIYGEKFEDENFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKIEDCGVL 176          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPID_USTMA1.711e-1952.69Peptidyl-prolyl cis-trans isomerase D OS=Ustilago ... [more]
PPIH_GIBZE4.977e-1956.47Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPID_DICDI6.501e-1955.43Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPID_CANGA8.490e-1954.26Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
CYPB_YEAST1.109e-1854.35Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
PPIH_USTMA5.503e-1850.00Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
PPIH_SCHPO5.503e-1852.38Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
CYP8_CAEEL7.187e-1850.00Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
PPIC_HUMAN9.387e-1861.43Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PPID_KLULA1.226e-1751.09Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
back to top