CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQLS 541
            GGESI G  F DENF+ KH    +LSMAN G  T GSQFF+ T     LDG HVVFG ++ G +V++ IE + + ++ R    V + DCG L+
Sbjct:   85 GGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 177          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL1_SCHPO (Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizosaccharomyces pombe GN=ppi1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  287 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGS-SSGRTNKPVVI 541
            GG SI G KF DE +    HTG GILSMAN+GP T  SQFF+  A T WLDGKH +FG++V G+ V K +  + + SS R  +P+ I
Sbjct:   63 GGTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRMGLIRTDSSDRPIEPLKI 149          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -1
Query:  335 G*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAI 523
            G +F DE +   +H  PG+LSMAN+GPGT GSQFF+    T WLDGKH VFG++VEGM+VV AI
Sbjct:  112 GYQFPDECDPALRHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKHTVFGKVVEGMEVVHAI 175          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP15_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus oryzae GN=cyp15 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = -1
Query:  293 GGESISG*KFADENFVK-KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPV 541
            GGESI G  F DE   + +H  P  +SMAN+GP T GSQFF+  A T WLD KH VFG++  GMDVV +IE   +   +TNKP+
Sbjct:  538 GGESIWGDDFEDEFSREFRHDRPYTVSMANAGPNTNGSQFFITVAPTTWLDNKHSVFGRVTAGMDVVHSIE--SAKVDKTNKPL 619          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 541
            GG SI G  F DE F  KH+ P +LSMAN GP +  SQFF+ TA     +GKHVVFG++V+G +VV  I+ +      +    V+I++CG+L
Sbjct:   83 GGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL1_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  314 GGESISG*KFADENFVK-KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS 541
            GG SI G +F DE     K TG GIL+MAN+GP T GSQFFV  A T+WLDGKH +FG++ +G+ +V  +  V ++S
Sbjct:   73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL1_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo sapiens GN=PPIL1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  314 GGESISG*KFADENFVK-KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS 541
            GG SI G +F DE     K TG GIL+MAN+GP T GSQFFV  A T+WLDGKH +FG++ +G+ +V  +  V ++S
Sbjct:   73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL1_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos taurus GN=PPIL1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  314 GGESISG*KFADENFVK-KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS 541
            GG SI G +F DE     K TG GIL+MAN+GP T GSQFFV  A T+WLDGKH +FG++ +G+ +V  +  V ++S
Sbjct:   73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  296 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP 541
            GGESI G +F DE +   +H  P  LSMAN+G  T GSQFF+    T WLD KH VFG++ +GM+VV+ I  V   + +T+KP
Sbjct:  553 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  296 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP 541
            GGESI G +F DE +   +H  P  LSMAN+G  T GSQFF+    T WLD KH VFG++ +GM+VV+ I  V   + +T+KP
Sbjct:  553 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
NKTR_HUMAN8.786e-1647.31NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]
PPIL1_SCHPO1.957e-1551.72Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizo... [more]
PPIB_TREPA2.556e-1560.94Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]
CYP15_RHIOR3.339e-1552.38Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizo... [more]
CYP9_CAEEL5.695e-1545.65Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL1_MOUSE1.269e-1451.95Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus ... [more]
PPIL1_HUMAN1.269e-1451.95Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo... [more]
PPIL1_BOVIN1.269e-1451.95Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos ... [more]
PPWD1_PONAB4.821e-1449.40Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN4.821e-1449.40Peptidylprolyl isomerase domain and WD repeat-cont... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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