CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 541
            GG+SI G +F DENF  KH GPG+LSMAN+GP T GSQFF+ T KT+WLDGKHVVFG + EGMDVVK IE  GS SG+T+K +VI DCGQLS
Sbjct:  115 GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32
Identity = 64/92 (69.57%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 541
            GG SI G +F DENF  KH GPG+LSMAN+GP T GSQFF+ T KT+WLDGKHVVFG + EGMDVVK IE  GS SG+T+K +VI DCGQLS
Sbjct:  115 GGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 541
            GGESI G KF DE FV+K   PG+LSMAN+GP T GSQFF+ T  T WLDGKHVVFGQ+VEGMDVVKAIEKVG+ +G T+K V +ADCGQLS
Sbjct:   81 GGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 5.127e-32
Identity = 63/91 (69.23%), Postives = 77/91 (84.62%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF+ KHTGPGILSMAN+GP T GSQFF+ TAKTEWLDGKHVVFG++ EGM +V+A+E  GS +G+T+K + IA+CGQL
Sbjct:   74 GGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.696e-32
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  KHTGPGIL MAN+GP T GSQFF+ TAKT WLD +HVVFG +VEGMDVVK +E +GS SG+TNK + + DCGQ+
Sbjct:   74 GGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.340e-31
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF +KHTGPG+LSMAN G  T GSQFF+ T KT WLDGKHVVFG+++EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:   81 GGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 9.669e-31
Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF  KHTGPGILSMANSGP T GSQFF+ T KT WLDGKHVVFG++V+G +VVKA+E VGS  G  ++ VVI DCG+L
Sbjct:   81 GGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.649e-30
Identity = 62/91 (68.13%), Postives = 72/91 (79.12%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF +KHTGPG+LSMAN+GP T GSQFF+ T KT WLDGKHVVFG++VEG+D+V  +E  GSSSG      +IADCGQL
Sbjct:   81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.813e-30
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENFV KHTGPG LSMAN+G  T GSQFF+ T KT WLDGKHVVFGQ+V GM+VV+ +E+ GS+SG+ +K VVI DCG+L
Sbjct:  225 GGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.674e-30
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KFADENF  KHT PGILSMAN+G  T GSQFF+ TA T WLDGKHVVFG + +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:   74 GGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPIF_RAT2.301e-3269.57Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE3.006e-3269.57Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYPH_MAIZE3.006e-3271.74Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
PPIA_RABIT5.127e-3269.23Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_BLAGE6.696e-3268.13Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
CYP2_CAEEL4.340e-3169.23Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
CP19C_ARATH9.669e-3170.33Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
CYP7_CAEEL1.649e-3068.13Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
PPIE_RHIOR2.813e-3068.13Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIA_HEMPU3.674e-3065.93Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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