CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 4.491e-28
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  +H G G+LSMANSGP T GSQFF+ T K +WLDGKHVVFG++V+G +VVK +E VGS SG+  +PV+I+ CG+L
Sbjct:  182 GGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.001e-27
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  +H G G+LSMANSGP T GSQFF+ T K +WLDGKHVVFG++V+G +VVK +E VGS SG+  +PV I+ CG+L
Sbjct:   88 GGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.001e-27
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = -1
Query:  275 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 541
            GG+SI G KF DENF  KH  PG+LSMAN+GP T GSQFF+ T  T WLDGKHVVFG++ EGMDVVK +E +GS+SG T   +VI  CG
Sbjct:   72 GGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.307e-27
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMD-VVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF KKH   G+LSMAN+GP T GSQFF+   KT WLDGKHVVFG+++EG D VVKA+EK GS SG+T+  + I DCG L
Sbjct:   72 GGESIYGKKFEDENFQKKHVERGMLSMANAGPNTNGSQFFITVTKTPWLDGKHVVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCGTL 163          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.307e-27
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 541
            GG+S+ G  F DENF   H GPG+LSMAN+GP T GSQFF+ T KT WLDG+HVVFGQ++EGM+VVK IE+  +  G R  K VVIADCGQL
Sbjct:  163 GGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  KH+ P +LSMAN+G  T GSQFF+ TA T WLDGKHVVFG++  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:   72 GGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KFADENFVKKH   G+LSMAN+GP T GSQFF+ T    WLDGKHVVFG++ +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:   92 GGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.911e-27
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 541
            GG+SI G +FADENF  +HTGPGILSMAN+G  T GSQFF+ T  T WLDG+HVVFG+++EGMDVV AIE   +  G R   PV+IADCG+L
Sbjct:  100 GGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 55/90 (61.11%), Postives = 71/90 (78.89%), Query Frame = -1
Query:  272 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 541
            G +SI G KF DEN ++KHTG GILSMAN+GP T GSQFF+ TAKTEWLDGKHV FG++ E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   74 GDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.486e-27
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = -1
Query:  299 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNK 541
            GG+SI G +F DENF  KH GPG+LSMAN+GP T GSQFF+ T KT+WLDGKHVVFG + EGMDVVK IE  GS SG+T+K
Sbjct:  117 GGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPIE_SCHMA4.491e-2862.64Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIE_SCHJA1.001e-2762.64Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
CYPH_SCHPO1.001e-2764.04Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
CYPH_UROFA1.307e-2765.22Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]
CP20B_ARATH1.307e-2764.13Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIA_ECHGR2.229e-2764.84Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
CYPC_YEAST2.229e-2761.54Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPIB_ORPSP2.911e-2764.13Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PAL4A_HUMAN4.966e-2761.11Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIF_BOVIN6.486e-2769.14Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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