CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.486e-27
Identity = 54/91 (59.34%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KFADENF  KH  PG+LSMAN+GP T GSQFF+      WLDGKHVVFG++VEG+++++ +E  GS SG+T + +VI+DCG++
Sbjct:   80 GGESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGEI 170          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.470e-27
Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KFADENF  KHTGPG LSMAN+G  T GSQFF+ T  T WLDG+HVVFG++V GMDVV  +E  G+ SG     VVI D G+L
Sbjct:  112 GGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.445e-26
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 541
            GGESI G KFADENF+ KHT PG+LSMAN+GPGT GSQFF+ T  T  LDGKHVVFG++VEGMDVV+ IE   + + R +KP   V IA CGQL
Sbjct:   78 GGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIE--ATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.887e-26
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF  KH+ PG+LSMAN+GP T GSQFF+ T  T WLDG+H VFG+++EGMD+VK +E +GS SG  +K   I++ G+L
Sbjct:  107 GGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.887e-26
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = -1
Query:  272 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 541
            G +SI G KF DEN ++KHTG GILSMAN+GP T GSQFF+  AKTEWLDGKHV FG++ E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   74 GDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.465e-26
Identity = 61/95 (64.21%), Postives = 69/95 (72.63%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLV--EGMDVVKAIEKVGSSSG--RTNKPVVIADCGQL 541
            GG+SI G KFADENF KKH  PG+LSMAN+GP T GSQFFV T  T WLDG+HVVFG++   E M VVKA+E  GSSSG  R +K   I DCG L
Sbjct:  129 GGKSIYGEKFADENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCGAL 223          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 4.204e-26
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF K H  PG+LSMAN+GP T GSQFF+ T    WLDGKHVVFG++V+G D+VK +E +GS SG T   +V+A  G+L
Sbjct:   72 GGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.365e-26
Identity = 55/91 (60.44%), Postives = 65/91 (71.43%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF  KHTG G+LSMAN+GP T GSQFF+   KT WLDG H VFGQLVEG  V++ +E+ G+ SG     V I DCG++
Sbjct:   84 GGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.086e-25
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQLS 541
            GG+SI G +F DENF  +HT PG+LSMAN+GP + GSQFF+ T  T WLDGKHVVFG+++EGMDVV  IEK  ++   + N  VVIADCG LS
Sbjct:  104 GGKSIYGSRFPDENFKLRHTVPGLLSMANAGPDSNGSQFFITTVVTSWLDGKHVVFGKVLEGMDVVTKIEKTPTNYRSKPNVDVVIADCGLLS 196          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.725e-25
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KFADENF  KH+ PG+LSMAN+GP T GSQFF+ T    WLDG HVVFG++ + M++V  IE +GS+SG     VVI DCG L
Sbjct:   71 GGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPI2_SYNY36.486e-2759.34Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CP20A_ARATH8.470e-2763.74Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CYPX_USEUD1.445e-2665.96Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIB_DICDI1.887e-2659.34Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PAL4B_HUMAN1.887e-2660.00Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
CYPH_NEUCR2.465e-2664.21Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYPH_YEAST4.204e-2659.34Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
CYP5_RHIOR9.365e-2660.44Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPIB2_RHIOR2.086e-2561.29Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
PPIA2_RHIOR2.725e-2559.34Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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